Hb_000804_030

Information

Type -
Description -
Location Contig804: 64158-68694
Sequence    

Annotation

kegg
ID rcu:RCOM_1445560
description Protein C14orf111, putative
nr
ID XP_002512860.1
description Protein C14orf111, putative [Ricinus communis]
swissprot
ID Q5RFQ0
description rRNA-processing protein FCF1 homolog OS=Pongo abelii GN=FCF1 PE=2 SV=1
trembl
ID B9RH01
description Protein C14orf111, putative OS=Ricinus communis GN=RCOM_1445560 PE=4 SV=1
Gene Ontology
ID GO:0032040
description rrna-processing protein fcf1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000804_030 0.0 - - Protein C14orf111, putative [Ricinus communis]
2 Hb_001348_110 0.0744639431 - - PREDICTED: esterase-like [Jatropha curcas]
3 Hb_008954_010 0.0865863236 - - -
4 Hb_002903_010 0.168653356 - - 60S ribosomal protein L37-3 [Morus notabilis]
5 Hb_031284_050 0.1702256508 - - -
6 Hb_034587_030 0.1713274763 - - -
7 Hb_018609_040 0.1718040856 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
8 Hb_000270_800 0.1718216131 - - -
9 Hb_075060_030 0.1718368274 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
10 Hb_002392_050 0.1793531096 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X4 [Jatropha curcas]
11 Hb_000869_110 0.1794166218 - - PREDICTED: choline monooxygenase, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_039112_010 0.1799573106 - - -
13 Hb_003837_020 0.1937027157 - - PREDICTED: uncharacterized protein LOC103710465 isoform X1 [Phoenix dactylifera]
14 Hb_001998_060 0.2025130944 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_001140_240 0.2057356334 - - metal ion binding protein, putative [Ricinus communis]
16 Hb_001520_020 0.20876167 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
17 Hb_000011_340 0.2100118326 - - PREDICTED: protein LURP-one-related 11-like [Jatropha curcas]
18 Hb_005725_110 0.2316096073 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002997_130 0.2381656019 - - -
20 Hb_028462_010 0.2384143514 - - PREDICTED: uncharacterized protein LOC101509514 [Cicer arietinum]

Gene co-expression network

sample Hb_000804_030 Hb_000804_030 Hb_001348_110 Hb_001348_110 Hb_000804_030--Hb_001348_110 Hb_008954_010 Hb_008954_010 Hb_000804_030--Hb_008954_010 Hb_002903_010 Hb_002903_010 Hb_000804_030--Hb_002903_010 Hb_031284_050 Hb_031284_050 Hb_000804_030--Hb_031284_050 Hb_034587_030 Hb_034587_030 Hb_000804_030--Hb_034587_030 Hb_018609_040 Hb_018609_040 Hb_000804_030--Hb_018609_040 Hb_001348_110--Hb_008954_010 Hb_001520_020 Hb_001520_020 Hb_001348_110--Hb_001520_020 Hb_000011_340 Hb_000011_340 Hb_001348_110--Hb_000011_340 Hb_075060_030 Hb_075060_030 Hb_001348_110--Hb_075060_030 Hb_000270_800 Hb_000270_800 Hb_001348_110--Hb_000270_800 Hb_008954_010--Hb_001520_020 Hb_008954_010--Hb_000011_340 Hb_001140_240 Hb_001140_240 Hb_008954_010--Hb_001140_240 Hb_005725_110 Hb_005725_110 Hb_008954_010--Hb_005725_110 Hb_000504_010 Hb_000504_010 Hb_002903_010--Hb_000504_010 Hb_001998_060 Hb_001998_060 Hb_002903_010--Hb_001998_060 Hb_115720_010 Hb_115720_010 Hb_002903_010--Hb_115720_010 Hb_039112_010 Hb_039112_010 Hb_002903_010--Hb_039112_010 Hb_000869_110 Hb_000869_110 Hb_002903_010--Hb_000869_110 Hb_031284_050--Hb_034587_030 Hb_031284_050--Hb_018609_040 Hb_031284_050--Hb_000270_800 Hb_031284_050--Hb_075060_030 Hb_002392_050 Hb_002392_050 Hb_031284_050--Hb_002392_050 Hb_031284_050--Hb_000869_110 Hb_034587_030--Hb_018609_040 Hb_034587_030--Hb_000270_800 Hb_034587_030--Hb_075060_030 Hb_034587_030--Hb_002392_050 Hb_034587_030--Hb_000869_110 Hb_018609_040--Hb_000270_800 Hb_018609_040--Hb_075060_030 Hb_018609_040--Hb_002392_050 Hb_018609_040--Hb_000869_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.708382 1.2519 0 0.117906 0

CAGE analysis