Hb_000804_040

Information

Type -
Description -
Location Contig804: 104086-108920
Sequence    

Annotation

kegg
ID rcu:RCOM_1668950
description protein with unknown function
nr
ID XP_002514505.1
description protein with unknown function [Ricinus communis]
swissprot
ID F4I933
description Rhodanese-like domain-containing protein 8, chloroplastic OS=Arabidopsis thaliana GN=STR8 PE=2 SV=1
trembl
ID B9RL86
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1668950 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000804_040 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_000205_190 0.0584117651 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
3 Hb_022693_140 0.0626515078 - - PREDICTED: uncharacterized protein LOC105632654 isoform X1 [Jatropha curcas]
4 Hb_004970_190 0.0637434084 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
5 Hb_001322_140 0.0706049529 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
6 Hb_012022_150 0.0731918073 - - PREDICTED: protein root UVB sensitive 5 [Jatropha curcas]
7 Hb_000753_240 0.0747515551 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
8 Hb_000331_110 0.0752936661 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
9 Hb_012395_230 0.0753481536 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
10 Hb_003029_070 0.0773714896 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000080_120 0.0796056399 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
12 Hb_002013_020 0.0814163029 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
13 Hb_007007_060 0.0814430896 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
14 Hb_000883_020 0.0822709975 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
15 Hb_004109_280 0.0832183834 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
16 Hb_029879_010 0.0835526872 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
17 Hb_000062_370 0.0837938743 - - beta-ketoacyl-ACP reductase [Vernicia fordii]
18 Hb_002876_230 0.0838495494 - - PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]
19 Hb_003939_050 0.0842805045 - - protein with unknown function [Ricinus communis]
20 Hb_002997_080 0.0848555409 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]

Gene co-expression network

sample Hb_000804_040 Hb_000804_040 Hb_000205_190 Hb_000205_190 Hb_000804_040--Hb_000205_190 Hb_022693_140 Hb_022693_140 Hb_000804_040--Hb_022693_140 Hb_004970_190 Hb_004970_190 Hb_000804_040--Hb_004970_190 Hb_001322_140 Hb_001322_140 Hb_000804_040--Hb_001322_140 Hb_012022_150 Hb_012022_150 Hb_000804_040--Hb_012022_150 Hb_000753_240 Hb_000753_240 Hb_000804_040--Hb_000753_240 Hb_001158_070 Hb_001158_070 Hb_000205_190--Hb_001158_070 Hb_000205_190--Hb_004970_190 Hb_008165_060 Hb_008165_060 Hb_000205_190--Hb_008165_060 Hb_001001_080 Hb_001001_080 Hb_000205_190--Hb_001001_080 Hb_007007_120 Hb_007007_120 Hb_000205_190--Hb_007007_120 Hb_022693_140--Hb_012022_150 Hb_000224_160 Hb_000224_160 Hb_022693_140--Hb_000224_160 Hb_029879_010 Hb_029879_010 Hb_022693_140--Hb_029879_010 Hb_000184_170 Hb_000184_170 Hb_022693_140--Hb_000184_170 Hb_000137_040 Hb_000137_040 Hb_022693_140--Hb_000137_040 Hb_012395_230 Hb_012395_230 Hb_004970_190--Hb_012395_230 Hb_004970_190--Hb_007007_120 Hb_003513_010 Hb_003513_010 Hb_004970_190--Hb_003513_010 Hb_000869_020 Hb_000869_020 Hb_004970_190--Hb_000869_020 Hb_004970_190--Hb_000753_240 Hb_001700_010 Hb_001700_010 Hb_001322_140--Hb_001700_010 Hb_001322_140--Hb_012022_150 Hb_001322_140--Hb_000205_190 Hb_001322_140--Hb_000184_170 Hb_001322_140--Hb_000224_160 Hb_012022_150--Hb_000224_160 Hb_002163_040 Hb_002163_040 Hb_012022_150--Hb_002163_040 Hb_003029_070 Hb_003029_070 Hb_012022_150--Hb_003029_070 Hb_012022_150--Hb_000753_240 Hb_000753_240--Hb_003029_070 Hb_000866_010 Hb_000866_010 Hb_000753_240--Hb_000866_010 Hb_000866_260 Hb_000866_260 Hb_000753_240--Hb_000866_260 Hb_002013_020 Hb_002013_020 Hb_000753_240--Hb_002013_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.107 6.51114 14.5464 5.56661 11.5523 13.1436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.74161 10.1929 9.58987 7.11855 12.9516

CAGE analysis