Hb_000805_020

Information

Type -
Description -
Location Contig805: 3740-10666
Sequence    

Annotation

kegg
ID pop:POPTR_0001s25020g
description POPTRDRAFT_752121; pumilio/Puf RNA-binding domain-containing family protein
nr
ID XP_002299859.2
description pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
swissprot
ID Q9ZW06
description Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1
trembl
ID B9GJ97
description Pumilio/Puf RNA-binding domain-containing family protein OS=Populus trichocarpa GN=POPTR_0001s25020g PE=4 SV=2
Gene Ontology
ID GO:0003723
description pumilio homolog 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58952: 3121-7415 , PASA_asmbl_58953: 7428-10421
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000805_020 0.0 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
2 Hb_004907_110 0.059578292 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
3 Hb_002026_180 0.0719433305 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
4 Hb_007441_230 0.0751556548 - - PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [Jatropha curcas]
5 Hb_007416_320 0.0762525656 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007441_200 0.0765915536 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
7 Hb_010883_090 0.0767769041 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
8 Hb_005618_170 0.0769123555 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
9 Hb_000571_120 0.0774448506 - - importin beta-1, putative [Ricinus communis]
10 Hb_002137_020 0.0789419705 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_002016_110 0.0798577629 - - transducin family protein [Populus trichocarpa]
12 Hb_000291_110 0.0821029541 - - eukaryotic translation initiation factor [Hevea brasiliensis]
13 Hb_003464_060 0.0828187281 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
14 Hb_000203_160 0.082854054 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
15 Hb_016901_010 0.0832231114 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
16 Hb_189003_080 0.0836635294 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
17 Hb_004586_340 0.0838999721 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
18 Hb_000030_300 0.0846397298 - - Thioredoxin, putative [Ricinus communis]
19 Hb_002631_060 0.0850359312 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
20 Hb_004223_280 0.0853894556 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000805_020 Hb_000805_020 Hb_004907_110 Hb_004907_110 Hb_000805_020--Hb_004907_110 Hb_002026_180 Hb_002026_180 Hb_000805_020--Hb_002026_180 Hb_007441_230 Hb_007441_230 Hb_000805_020--Hb_007441_230 Hb_007416_320 Hb_007416_320 Hb_000805_020--Hb_007416_320 Hb_007441_200 Hb_007441_200 Hb_000805_020--Hb_007441_200 Hb_010883_090 Hb_010883_090 Hb_000805_020--Hb_010883_090 Hb_007532_030 Hb_007532_030 Hb_004907_110--Hb_007532_030 Hb_008725_260 Hb_008725_260 Hb_004907_110--Hb_008725_260 Hb_031527_040 Hb_031527_040 Hb_004907_110--Hb_031527_040 Hb_000876_070 Hb_000876_070 Hb_004907_110--Hb_000876_070 Hb_002631_060 Hb_002631_060 Hb_004907_110--Hb_002631_060 Hb_000030_300 Hb_000030_300 Hb_002026_180--Hb_000030_300 Hb_002016_110 Hb_002016_110 Hb_002026_180--Hb_002016_110 Hb_007416_280 Hb_007416_280 Hb_002026_180--Hb_007416_280 Hb_000571_120 Hb_000571_120 Hb_002026_180--Hb_000571_120 Hb_003766_040 Hb_003766_040 Hb_002026_180--Hb_003766_040 Hb_189003_080 Hb_189003_080 Hb_002026_180--Hb_189003_080 Hb_002137_020 Hb_002137_020 Hb_007441_230--Hb_002137_020 Hb_004223_280 Hb_004223_280 Hb_007441_230--Hb_004223_280 Hb_005305_080 Hb_005305_080 Hb_007441_230--Hb_005305_080 Hb_007441_230--Hb_007441_200 Hb_007441_230--Hb_000571_120 Hb_005618_170 Hb_005618_170 Hb_007416_320--Hb_005618_170 Hb_001633_210 Hb_001633_210 Hb_007416_320--Hb_001633_210 Hb_000058_060 Hb_000058_060 Hb_007416_320--Hb_000058_060 Hb_000062_220 Hb_000062_220 Hb_007416_320--Hb_000062_220 Hb_007416_320--Hb_000876_070 Hb_000120_470 Hb_000120_470 Hb_007416_320--Hb_000120_470 Hb_003106_060 Hb_003106_060 Hb_007441_200--Hb_003106_060 Hb_007441_200--Hb_005618_170 Hb_007441_200--Hb_005305_080 Hb_007441_200--Hb_000571_120 Hb_018838_030 Hb_018838_030 Hb_007441_200--Hb_018838_030 Hb_010883_090--Hb_002631_060 Hb_003994_060 Hb_003994_060 Hb_010883_090--Hb_003994_060 Hb_003687_240 Hb_003687_240 Hb_010883_090--Hb_003687_240 Hb_001892_020 Hb_001892_020 Hb_010883_090--Hb_001892_020 Hb_010883_090--Hb_004907_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.7158 29.105 11.7785 14.6558 26.0939 40.4601
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.518 46.2407 53.3704 34.1248 14.8164

CAGE analysis