Hb_000805_040

Information

Type -
Description -
Location Contig805: 20453-26076
Sequence    

Annotation

kegg
ID fve:101294151
description E3 ubiquitin-protein ligase RING1-like
nr
ID XP_012066982.1
description PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
swissprot
ID Q9M2S6
description E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana GN=SDIR1 PE=1 SV=1
trembl
ID A0A067L1F8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02957 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ring1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58956: 23785-27707 , PASA_asmbl_58957: 23784-27707
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000805_040 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
2 Hb_001863_270 0.0808368785 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
3 Hb_011360_090 0.0916067096 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
4 Hb_000009_200 0.1113954734 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
5 Hb_000373_250 0.1164615268 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
6 Hb_007120_010 0.1165285801 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]
7 Hb_011930_120 0.1165844498 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
8 Hb_004712_160 0.1184826597 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
9 Hb_001989_060 0.1197815348 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
10 Hb_002122_030 0.1217312877 - - -
11 Hb_002311_150 0.1225625981 - - Protein COBRA precursor, putative [Ricinus communis]
12 Hb_012787_040 0.1259816438 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
13 Hb_000069_330 0.1285189143 - - protein with unknown function [Ricinus communis]
14 Hb_000776_050 0.1298375727 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
15 Hb_004586_130 0.1327854186 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001246_160 0.1330258741 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
17 Hb_002876_070 0.1414475023 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
18 Hb_002445_130 0.1425368759 - - Disease resistance protein RGA2, putative [Ricinus communis]
19 Hb_178658_010 0.1428796313 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
20 Hb_001294_050 0.1443313439 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]

Gene co-expression network

sample Hb_000805_040 Hb_000805_040 Hb_001863_270 Hb_001863_270 Hb_000805_040--Hb_001863_270 Hb_011360_090 Hb_011360_090 Hb_000805_040--Hb_011360_090 Hb_000009_200 Hb_000009_200 Hb_000805_040--Hb_000009_200 Hb_000373_250 Hb_000373_250 Hb_000805_040--Hb_000373_250 Hb_007120_010 Hb_007120_010 Hb_000805_040--Hb_007120_010 Hb_011930_120 Hb_011930_120 Hb_000805_040--Hb_011930_120 Hb_001863_270--Hb_007120_010 Hb_001989_060 Hb_001989_060 Hb_001863_270--Hb_001989_060 Hb_001863_270--Hb_000373_250 Hb_001863_270--Hb_011360_090 Hb_002053_030 Hb_002053_030 Hb_001863_270--Hb_002053_030 Hb_012787_040 Hb_012787_040 Hb_011360_090--Hb_012787_040 Hb_001662_170 Hb_001662_170 Hb_011360_090--Hb_001662_170 Hb_009040_010 Hb_009040_010 Hb_011360_090--Hb_009040_010 Hb_000803_060 Hb_000803_060 Hb_011360_090--Hb_000803_060 Hb_006414_020 Hb_006414_020 Hb_011360_090--Hb_006414_020 Hb_005714_100 Hb_005714_100 Hb_000009_200--Hb_005714_100 Hb_008112_010 Hb_008112_010 Hb_000009_200--Hb_008112_010 Hb_001246_160 Hb_001246_160 Hb_000009_200--Hb_001246_160 Hb_000069_330 Hb_000069_330 Hb_000009_200--Hb_000069_330 Hb_000035_050 Hb_000035_050 Hb_000009_200--Hb_000035_050 Hb_056196_060 Hb_056196_060 Hb_000009_200--Hb_056196_060 Hb_000373_250--Hb_007120_010 Hb_005282_010 Hb_005282_010 Hb_000373_250--Hb_005282_010 Hb_002498_250 Hb_002498_250 Hb_000373_250--Hb_002498_250 Hb_000988_020 Hb_000988_020 Hb_000373_250--Hb_000988_020 Hb_002849_110 Hb_002849_110 Hb_000373_250--Hb_002849_110 Hb_001405_060 Hb_001405_060 Hb_000373_250--Hb_001405_060 Hb_007120_010--Hb_001989_060 Hb_000045_140 Hb_000045_140 Hb_007120_010--Hb_000045_140 Hb_007120_010--Hb_002498_250 Hb_001579_070 Hb_001579_070 Hb_011930_120--Hb_001579_070 Hb_000680_180 Hb_000680_180 Hb_011930_120--Hb_000680_180 Hb_000086_620 Hb_000086_620 Hb_011930_120--Hb_000086_620 Hb_011930_120--Hb_001989_060 Hb_011930_120--Hb_002498_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.4797 161.74 79.0346 66.1424 12.6787 6.58154
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.13576 9.11366 8.81659 10.8094 21.7006

CAGE analysis