Hb_000805_090

Information

Type -
Description -
Location Contig805: 62849-64075
Sequence    

Annotation

kegg
ID pop:POPTR_0009s03890g
description POPTRDRAFT_650244; hypothetical protein
nr
ID XP_002314167.1
description hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HPE9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s03890g PE=4 SV=1
Gene Ontology
ID GO:0008168
description c-terminal s-isoprenylcysteine carboxyl o-methyltransferases

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58963: 62735-64171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000805_090 0.0 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
2 Hb_003638_030 0.0670579232 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
3 Hb_001981_090 0.0789845001 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
4 Hb_002357_040 0.0801595016 - - latex-abundant protein [Hevea brasiliensis]
5 Hb_000809_040 0.0859225411 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
6 Hb_011174_070 0.0866777647 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
7 Hb_003861_080 0.0866926383 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]
8 Hb_000152_140 0.0870427963 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
9 Hb_000700_090 0.0926802097 - - protein with unknown function [Ricinus communis]
10 Hb_001366_220 0.0943887031 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006602_020 0.094710391 - - unknown [Medicago truncatula]
12 Hb_004046_010 0.095587352 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
13 Hb_003057_120 0.0974394708 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
14 Hb_000696_110 0.0982472715 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
15 Hb_000110_160 0.1018836122 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005779_100 0.1019927623 - - DNAJ [Theobroma cacao]
17 Hb_000983_100 0.1022284681 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
18 Hb_002207_100 0.102480639 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
19 Hb_000387_080 0.1025616809 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
20 Hb_001157_030 0.1042167429 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000805_090 Hb_000805_090 Hb_003638_030 Hb_003638_030 Hb_000805_090--Hb_003638_030 Hb_001981_090 Hb_001981_090 Hb_000805_090--Hb_001981_090 Hb_002357_040 Hb_002357_040 Hb_000805_090--Hb_002357_040 Hb_000809_040 Hb_000809_040 Hb_000805_090--Hb_000809_040 Hb_011174_070 Hb_011174_070 Hb_000805_090--Hb_011174_070 Hb_003861_080 Hb_003861_080 Hb_000805_090--Hb_003861_080 Hb_002207_100 Hb_002207_100 Hb_003638_030--Hb_002207_100 Hb_026048_100 Hb_026048_100 Hb_003638_030--Hb_026048_100 Hb_000172_400 Hb_000172_400 Hb_003638_030--Hb_000172_400 Hb_162275_010 Hb_162275_010 Hb_003638_030--Hb_162275_010 Hb_000700_090 Hb_000700_090 Hb_003638_030--Hb_000700_090 Hb_005357_150 Hb_005357_150 Hb_001981_090--Hb_005357_150 Hb_001366_220 Hb_001366_220 Hb_001981_090--Hb_001366_220 Hb_001981_090--Hb_000809_040 Hb_000983_100 Hb_000983_100 Hb_001981_090--Hb_000983_100 Hb_001981_090--Hb_002357_040 Hb_000025_480 Hb_000025_480 Hb_002357_040--Hb_000025_480 Hb_002357_040--Hb_001366_220 Hb_000696_110 Hb_000696_110 Hb_002357_040--Hb_000696_110 Hb_000387_080 Hb_000387_080 Hb_002357_040--Hb_000387_080 Hb_000809_040--Hb_001366_220 Hb_000313_380 Hb_000313_380 Hb_000809_040--Hb_000313_380 Hb_004882_020 Hb_004882_020 Hb_000809_040--Hb_004882_020 Hb_000085_310 Hb_000085_310 Hb_000809_040--Hb_000085_310 Hb_000771_140 Hb_000771_140 Hb_000809_040--Hb_000771_140 Hb_003057_120 Hb_003057_120 Hb_011174_070--Hb_003057_120 Hb_000427_030 Hb_000427_030 Hb_011174_070--Hb_000427_030 Hb_011174_070--Hb_000387_080 Hb_000057_060 Hb_000057_060 Hb_011174_070--Hb_000057_060 Hb_011174_070--Hb_000025_480 Hb_004046_010 Hb_004046_010 Hb_003861_080--Hb_004046_010 Hb_000110_160 Hb_000110_160 Hb_003861_080--Hb_000110_160 Hb_001635_100 Hb_001635_100 Hb_003861_080--Hb_001635_100 Hb_007943_080 Hb_007943_080 Hb_003861_080--Hb_007943_080 Hb_001157_030 Hb_001157_030 Hb_003861_080--Hb_001157_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
249.612 81.1934 12.4812 21.6803 217.717 297.875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
248.024 186.681 355.249 79.8291 27.8186

CAGE analysis