Hb_000805_100

Information

Type -
Description -
Location Contig805: 69455-74414
Sequence    

Annotation

kegg
ID vvi:100250187
description ATP-dependent zinc metalloprotease FTSH 10, mitochondrial
nr
ID XP_012066998.1
description PREDICTED: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID Q8VZI8
description ATP-dependent zinc metalloprotease FTSH 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1
trembl
ID A0A067LCN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02970 PE=3 SV=1
Gene Ontology
ID GO:0016021
description atp-dependent zinc metalloprotease ftsh mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58964: 69477-74338
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000805_100 0.0 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 10, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_003943_110 0.0757982858 transcription factor TF Family: MYB-related Zuotin, putative [Ricinus communis]
3 Hb_001716_040 0.0772783007 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
4 Hb_000567_230 0.0809266386 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
5 Hb_001478_010 0.0812065676 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Jatropha curcas]
6 Hb_006913_020 0.0833145571 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
7 Hb_009296_070 0.0857792659 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
8 Hb_008033_040 0.086564652 - - PREDICTED: MATE efflux family protein 3, chloroplastic [Jatropha curcas]
9 Hb_001818_100 0.0867949793 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
10 Hb_000768_200 0.0899959231 - - hypothetical protein POPTR_0013s06910g [Populus trichocarpa]
11 Hb_000635_060 0.0901521806 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
12 Hb_000130_220 0.0904165347 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Jatropha curcas]
13 Hb_008421_020 0.0905123227 - - PREDICTED: uncharacterized protein LOC105635546 isoform X2 [Jatropha curcas]
14 Hb_000107_430 0.0906505391 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Jatropha curcas]
15 Hb_000482_040 0.0913980322 - - Protein YME1, putative [Ricinus communis]
16 Hb_000364_050 0.0914179184 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
17 Hb_027073_020 0.0917915628 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
18 Hb_001975_150 0.0917966723 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
19 Hb_004052_170 0.0918931949 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
20 Hb_000504_180 0.0924708553 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000805_100 Hb_000805_100 Hb_003943_110 Hb_003943_110 Hb_000805_100--Hb_003943_110 Hb_001716_040 Hb_001716_040 Hb_000805_100--Hb_001716_040 Hb_000567_230 Hb_000567_230 Hb_000805_100--Hb_000567_230 Hb_001478_010 Hb_001478_010 Hb_000805_100--Hb_001478_010 Hb_006913_020 Hb_006913_020 Hb_000805_100--Hb_006913_020 Hb_009296_070 Hb_009296_070 Hb_000805_100--Hb_009296_070 Hb_001157_240 Hb_001157_240 Hb_003943_110--Hb_001157_240 Hb_003943_110--Hb_001716_040 Hb_005582_040 Hb_005582_040 Hb_003943_110--Hb_005582_040 Hb_027073_020 Hb_027073_020 Hb_003943_110--Hb_027073_020 Hb_001998_240 Hb_001998_240 Hb_003943_110--Hb_001998_240 Hb_008033_040 Hb_008033_040 Hb_003943_110--Hb_008033_040 Hb_000640_040 Hb_000640_040 Hb_001716_040--Hb_000640_040 Hb_001716_040--Hb_005582_040 Hb_008948_020 Hb_008948_020 Hb_001716_040--Hb_008948_020 Hb_004435_030 Hb_004435_030 Hb_001716_040--Hb_004435_030 Hb_000504_180 Hb_000504_180 Hb_001716_040--Hb_000504_180 Hb_002042_050 Hb_002042_050 Hb_000567_230--Hb_002042_050 Hb_002272_030 Hb_002272_030 Hb_000567_230--Hb_002272_030 Hb_001817_170 Hb_001817_170 Hb_000567_230--Hb_001817_170 Hb_000703_190 Hb_000703_190 Hb_000567_230--Hb_000703_190 Hb_006100_020 Hb_006100_020 Hb_000567_230--Hb_006100_020 Hb_000139_080 Hb_000139_080 Hb_000567_230--Hb_000139_080 Hb_001478_010--Hb_001716_040 Hb_002686_090 Hb_002686_090 Hb_001478_010--Hb_002686_090 Hb_000635_060 Hb_000635_060 Hb_001478_010--Hb_000635_060 Hb_001478_010--Hb_000640_040 Hb_001975_150 Hb_001975_150 Hb_001478_010--Hb_001975_150 Hb_007413_010 Hb_007413_010 Hb_006913_020--Hb_007413_010 Hb_021374_030 Hb_021374_030 Hb_006913_020--Hb_021374_030 Hb_006913_020--Hb_008948_020 Hb_001377_190 Hb_001377_190 Hb_006913_020--Hb_001377_190 Hb_001789_110 Hb_001789_110 Hb_006913_020--Hb_001789_110 Hb_003098_070 Hb_003098_070 Hb_006913_020--Hb_003098_070 Hb_005588_080 Hb_005588_080 Hb_009296_070--Hb_005588_080 Hb_003861_060 Hb_003861_060 Hb_009296_070--Hb_003861_060 Hb_010578_080 Hb_010578_080 Hb_009296_070--Hb_010578_080 Hb_062226_130 Hb_062226_130 Hb_009296_070--Hb_062226_130 Hb_003878_090 Hb_003878_090 Hb_009296_070--Hb_003878_090 Hb_000365_230 Hb_000365_230 Hb_009296_070--Hb_000365_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5587 14.9923 18.9475 20.7954 9.09177 10.0751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7825 20.5495 19.4273 18.8989 30.5062

CAGE analysis