Hb_000805_110

Information

Type -
Description -
Location Contig805: 80552-85409
Sequence    

Annotation

kegg
ID rcu:RCOM_0300260
description catalytic, putative
nr
ID XP_012067002.1
description PREDICTED: uncharacterized protein C24B11.05 [Jatropha curcas]
swissprot
ID Q09893
description Uncharacterized protein C24B11.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24B11.05 PE=3 SV=1
trembl
ID A0A067L1H0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02972 PE=4 SV=1
Gene Ontology
ID GO:0016787
description haloacid dehalogenase-like hydrolase superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58965: 80646-82648 , PASA_asmbl_58966: 83331-85501 , PASA_asmbl_58967: 84135-84603
cDNA
(Sanger)
(ID:Location)		 012_E17.ab1: 80848-82121

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000805_110 0.0 - - PREDICTED: uncharacterized protein C24B11.05 [Jatropha curcas]
2 Hb_000211_030 0.1016627046 - - sugar transporter, putative [Ricinus communis]
3 Hb_000309_130 0.1278572058 - - hypothetical protein JCGZ_09592 [Jatropha curcas]
4 Hb_002217_020 0.1281246845 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
5 Hb_000367_160 0.1295992205 - - PREDICTED: SNAP25 homologous protein SNAP33 [Populus euphratica]
6 Hb_000086_140 0.1308323675 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
7 Hb_009904_010 0.1326352057 - - hypothetical protein JCGZ_16885 [Jatropha curcas]
8 Hb_003362_030 0.1337330447 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
9 Hb_004324_300 0.1363197513 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
10 Hb_000193_110 0.1410071204 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
11 Hb_000327_380 0.1415539048 - - hypothetical protein JCGZ_06621 [Jatropha curcas]
12 Hb_000045_300 0.1420947948 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier isoform X1 [Jatropha curcas]
13 Hb_007943_050 0.1429573228 - - peroxiredoxin, putative [Ricinus communis]
14 Hb_000155_200 0.143003408 - - Rab7 [Hevea brasiliensis]
15 Hb_001019_100 0.1450641272 - - BnaC02g13240D [Brassica napus]
16 Hb_003582_070 0.1484950051 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000448_050 0.1490744234 - - PREDICTED: ubiquinol oxidase, mitochondrial [Jatropha curcas]
18 Hb_004724_270 0.1494124757 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
19 Hb_000115_220 0.1494269902 - - hypothetical protein CISIN_1g0379742mg, partial [Citrus sinensis]
20 Hb_181729_010 0.1501400238 - - PREDICTED: DNA polymerase epsilon subunit 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000805_110 Hb_000805_110 Hb_000211_030 Hb_000211_030 Hb_000805_110--Hb_000211_030 Hb_000309_130 Hb_000309_130 Hb_000805_110--Hb_000309_130 Hb_002217_020 Hb_002217_020 Hb_000805_110--Hb_002217_020 Hb_000367_160 Hb_000367_160 Hb_000805_110--Hb_000367_160 Hb_000086_140 Hb_000086_140 Hb_000805_110--Hb_000086_140 Hb_009904_010 Hb_009904_010 Hb_000805_110--Hb_009904_010 Hb_008643_200 Hb_008643_200 Hb_000211_030--Hb_008643_200 Hb_189216_030 Hb_189216_030 Hb_000211_030--Hb_189216_030 Hb_000211_030--Hb_002217_020 Hb_003362_030 Hb_003362_030 Hb_000211_030--Hb_003362_030 Hb_001856_200 Hb_001856_200 Hb_000211_030--Hb_001856_200 Hb_000733_180 Hb_000733_180 Hb_000309_130--Hb_000733_180 Hb_003124_150 Hb_003124_150 Hb_000309_130--Hb_003124_150 Hb_000928_070 Hb_000928_070 Hb_000309_130--Hb_000928_070 Hb_022250_060 Hb_022250_060 Hb_000309_130--Hb_022250_060 Hb_001019_100 Hb_001019_100 Hb_000309_130--Hb_001019_100 Hb_000221_190 Hb_000221_190 Hb_000309_130--Hb_000221_190 Hb_002217_020--Hb_022250_060 Hb_007317_010 Hb_007317_010 Hb_002217_020--Hb_007317_010 Hb_003657_010 Hb_003657_010 Hb_002217_020--Hb_003657_010 Hb_136509_010 Hb_136509_010 Hb_002217_020--Hb_136509_010 Hb_002217_020--Hb_001856_200 Hb_000164_020 Hb_000164_020 Hb_002217_020--Hb_000164_020 Hb_012286_030 Hb_012286_030 Hb_000367_160--Hb_012286_030 Hb_000155_200 Hb_000155_200 Hb_000367_160--Hb_000155_200 Hb_019280_050 Hb_019280_050 Hb_000367_160--Hb_019280_050 Hb_004410_080 Hb_004410_080 Hb_000367_160--Hb_004410_080 Hb_000193_110 Hb_000193_110 Hb_000367_160--Hb_000193_110 Hb_000336_150 Hb_000336_150 Hb_000367_160--Hb_000336_150 Hb_000608_050 Hb_000608_050 Hb_000086_140--Hb_000608_050 Hb_000733_200 Hb_000733_200 Hb_000086_140--Hb_000733_200 Hb_000365_270 Hb_000365_270 Hb_000086_140--Hb_000365_270 Hb_017895_040 Hb_017895_040 Hb_000086_140--Hb_017895_040 Hb_000086_140--Hb_000221_190 Hb_005867_090 Hb_005867_090 Hb_000086_140--Hb_005867_090 Hb_009904_010--Hb_000309_130 Hb_007810_010 Hb_007810_010 Hb_009904_010--Hb_007810_010 Hb_009904_010--Hb_003124_150 Hb_002043_030 Hb_002043_030 Hb_009904_010--Hb_002043_030 Hb_009904_010--Hb_000367_160 Hb_001287_040 Hb_001287_040 Hb_009904_010--Hb_001287_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.2884 47.4417 57.8941 41.1243 16.3704 11.5977
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.8232 58.6226 58.1415 12.2105 20.682

CAGE analysis