Hb_000805_130

Information

Type -
Description -
Location Contig805: 90758-93328
Sequence    

Annotation

kegg
ID rcu:RCOM_0300280
description hypothetical protein
nr
ID XP_002533747.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T678
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0300280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58969: 90764-92493 , PASA_asmbl_58971: 90777-92493 , PASA_asmbl_58972: 90777-93284 , PASA_asmbl_58973: 90777-93284
cDNA
(Sanger)
(ID:Location)		 001_E05.ab1: 90764-92324 , 012_B21.ab1: 90764-92371 , 034_H13.ab1: 90764-92378

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000805_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007575_070 0.0667534646 - - Histone H3.2 [Glycine soja]
3 Hb_001634_040 0.0711192933 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
4 Hb_000172_420 0.0884139032 - - 60S ribosomal protein L30, putative [Ricinus communis]
5 Hb_000062_390 0.0930725411 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
6 Hb_008948_050 0.0935165875 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
7 Hb_076626_010 0.0943648471 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002588_010 0.0977013868 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
9 Hb_017862_010 0.0984179107 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
10 Hb_001386_050 0.0989764221 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
11 Hb_019516_100 0.0999091722 - - 40S ribosomal protein S14, putative [Ricinus communis]
12 Hb_000963_030 0.1000711546 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
13 Hb_004007_180 0.1001342219 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
14 Hb_005590_020 0.1008231033 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
15 Hb_002835_320 0.101247138 - - 60S ribosomal protein L27B [Hevea brasiliensis]
16 Hb_026398_010 0.1018902738 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
17 Hb_000163_130 0.102721803 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
18 Hb_009384_020 0.1032387044 - - hypothetical protein JCGZ_24168 [Jatropha curcas]
19 Hb_000617_090 0.1039882588 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
20 Hb_011311_010 0.1042280568 - - 60S ribosomal protein L27C [Hevea brasiliensis]

Gene co-expression network

sample Hb_000805_130 Hb_000805_130 Hb_007575_070 Hb_007575_070 Hb_000805_130--Hb_007575_070 Hb_001634_040 Hb_001634_040 Hb_000805_130--Hb_001634_040 Hb_000172_420 Hb_000172_420 Hb_000805_130--Hb_000172_420 Hb_000062_390 Hb_000062_390 Hb_000805_130--Hb_000062_390 Hb_008948_050 Hb_008948_050 Hb_000805_130--Hb_008948_050 Hb_076626_010 Hb_076626_010 Hb_000805_130--Hb_076626_010 Hb_007575_070--Hb_001634_040 Hb_007944_040 Hb_007944_040 Hb_007575_070--Hb_007944_040 Hb_002588_010 Hb_002588_010 Hb_007575_070--Hb_002588_010 Hb_007575_070--Hb_000062_390 Hb_001045_080 Hb_001045_080 Hb_007575_070--Hb_001045_080 Hb_001634_040--Hb_000062_390 Hb_000181_300 Hb_000181_300 Hb_001634_040--Hb_000181_300 Hb_000012_100 Hb_000012_100 Hb_001634_040--Hb_000012_100 Hb_000193_120 Hb_000193_120 Hb_001634_040--Hb_000193_120 Hb_002248_100 Hb_002248_100 Hb_000172_420--Hb_002248_100 Hb_006588_080 Hb_006588_080 Hb_000172_420--Hb_006588_080 Hb_000172_420--Hb_000062_390 Hb_000635_080 Hb_000635_080 Hb_000172_420--Hb_000635_080 Hb_000270_720 Hb_000270_720 Hb_000172_420--Hb_000270_720 Hb_000172_420--Hb_008948_050 Hb_000062_390--Hb_002588_010 Hb_019516_100 Hb_019516_100 Hb_000062_390--Hb_019516_100 Hb_001155_040 Hb_001155_040 Hb_000062_390--Hb_001155_040 Hb_000093_110 Hb_000093_110 Hb_000062_390--Hb_000093_110 Hb_007304_070 Hb_007304_070 Hb_000062_390--Hb_007304_070 Hb_000645_140 Hb_000645_140 Hb_008948_050--Hb_000645_140 Hb_008948_050--Hb_002588_010 Hb_001386_050 Hb_001386_050 Hb_008948_050--Hb_001386_050 Hb_000042_260 Hb_000042_260 Hb_008948_050--Hb_000042_260 Hb_002909_130 Hb_002909_130 Hb_008948_050--Hb_002909_130 Hb_008948_050--Hb_019516_100 Hb_010672_070 Hb_010672_070 Hb_076626_010--Hb_010672_070 Hb_005590_020 Hb_005590_020 Hb_076626_010--Hb_005590_020 Hb_002999_050 Hb_002999_050 Hb_076626_010--Hb_002999_050 Hb_000933_160 Hb_000933_160 Hb_076626_010--Hb_000933_160 Hb_001158_230 Hb_001158_230 Hb_076626_010--Hb_001158_230 Hb_003893_050 Hb_003893_050 Hb_076626_010--Hb_003893_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.99379 0.638685 2.13105 1.69813 1.43349 3.32795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.8899 15.5386 5.57973 1.78128 0.90175

CAGE analysis