Hb_000805_150

Information

Type transcription factor
Description TF Family: GRAS
Location Contig805: 98811-100898
Sequence    

Annotation

kegg
ID rcu:RCOM_0300300
description transcription factor, putative
nr
ID XP_002533749.1
description transcription factor, putative [Ricinus communis]
swissprot
ID P0C883
description Scarecrow-like protein 33 OS=Arabidopsis thaliana GN=SCL33 PE=1 SV=1
trembl
ID B9T680
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0300300 PE=4 SV=1
Gene Ontology
ID GO:0006351
description scarecrow-like protein 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 008_D08.ab1: 99079-99376 , 030_J21.ab1: 99049-99244

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000805_150 0.0 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
2 Hb_000245_270 0.0964753883 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
3 Hb_078901_010 0.0972525016 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
4 Hb_116349_090 0.1015947525 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
5 Hb_011287_020 0.1019252382 - - ATP binding protein, putative [Ricinus communis]
6 Hb_009476_010 0.1032103569 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
7 Hb_007441_150 0.1115969593 - - Ankyrin repeat family protein [Theobroma cacao]
8 Hb_029238_020 0.1148213487 - - PREDICTED: expansin-like A1 [Jatropha curcas]
9 Hb_000373_250 0.1164885509 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
10 Hb_000988_020 0.1190131609 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
11 Hb_032920_040 0.121426034 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
12 Hb_000434_050 0.1223749398 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
13 Hb_000532_030 0.1274761682 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]
14 Hb_002053_030 0.1334099561 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
15 Hb_001477_080 0.1336413422 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
16 Hb_000506_130 0.1336421153 - - DGCR14-related family protein [Populus trichocarpa]
17 Hb_032260_100 0.1344000739 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
18 Hb_000529_050 0.1358126242 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
19 Hb_029622_080 0.1391239605 transcription factor TF Family: AP2 hypothetical protein JCGZ_26299 [Jatropha curcas]
20 Hb_000796_200 0.1394854385 - - PREDICTED: probable glycerol-3-phosphate acyltransferase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000805_150 Hb_000805_150 Hb_000245_270 Hb_000245_270 Hb_000805_150--Hb_000245_270 Hb_078901_010 Hb_078901_010 Hb_000805_150--Hb_078901_010 Hb_116349_090 Hb_116349_090 Hb_000805_150--Hb_116349_090 Hb_011287_020 Hb_011287_020 Hb_000805_150--Hb_011287_020 Hb_009476_010 Hb_009476_010 Hb_000805_150--Hb_009476_010 Hb_007441_150 Hb_007441_150 Hb_000805_150--Hb_007441_150 Hb_000506_130 Hb_000506_130 Hb_000245_270--Hb_000506_130 Hb_029238_020 Hb_029238_020 Hb_000245_270--Hb_029238_020 Hb_000245_270--Hb_116349_090 Hb_004143_050 Hb_004143_050 Hb_000245_270--Hb_004143_050 Hb_000245_270--Hb_078901_010 Hb_000434_050 Hb_000434_050 Hb_078901_010--Hb_000434_050 Hb_078901_010--Hb_009476_010 Hb_000172_080 Hb_000172_080 Hb_078901_010--Hb_000172_080 Hb_000373_250 Hb_000373_250 Hb_078901_010--Hb_000373_250 Hb_001511_270 Hb_001511_270 Hb_116349_090--Hb_001511_270 Hb_116349_090--Hb_029238_020 Hb_004242_160 Hb_004242_160 Hb_116349_090--Hb_004242_160 Hb_001477_080 Hb_001477_080 Hb_116349_090--Hb_001477_080 Hb_001846_040 Hb_001846_040 Hb_011287_020--Hb_001846_040 Hb_011287_020--Hb_009476_010 Hb_006483_050 Hb_006483_050 Hb_011287_020--Hb_006483_050 Hb_011287_020--Hb_001477_080 Hb_019654_010 Hb_019654_010 Hb_011287_020--Hb_019654_010 Hb_032260_100 Hb_032260_100 Hb_009476_010--Hb_032260_100 Hb_000422_050 Hb_000422_050 Hb_009476_010--Hb_000422_050 Hb_029622_080 Hb_029622_080 Hb_009476_010--Hb_029622_080 Hb_000024_020 Hb_000024_020 Hb_007441_150--Hb_000024_020 Hb_001894_060 Hb_001894_060 Hb_007441_150--Hb_001894_060 Hb_000988_020 Hb_000988_020 Hb_007441_150--Hb_000988_020 Hb_007441_150--Hb_032260_100 Hb_007441_150--Hb_029622_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.52383 428.707 97.1432 128.952 2.59017 3.19359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.2731 12.0382 12.5359 11.2447 28.0161

CAGE analysis