Hb_000805_200

Information

Type -
Description -
Location Contig805: 191064-195816
Sequence    

Annotation

kegg
ID rcu:RCOM_0352020
description hypothetical protein
nr
ID XP_012067015.1
description PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
swissprot
ID Q6R0E3
description Telomere repeat-binding protein 5 OS=Arabidopsis thaliana GN=TRP5 PE=1 SV=2
trembl
ID A0A067L1I0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02982 PE=4 SV=1
Gene Ontology
ID GO:0003677
description telomere repeat-binding protein 5-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58981: 191342-193857 , PASA_asmbl_58983: 194971-197157 , PASA_asmbl_58984: 194971-195938
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000805_200 0.0 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
2 Hb_005694_130 0.0896518336 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
3 Hb_000609_110 0.1004907644 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
4 Hb_000836_540 0.1054011598 - - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Theobroma cacao]
5 Hb_027380_210 0.1091052027 - - PREDICTED: uncharacterized protein LOC105634030 [Jatropha curcas]
6 Hb_003001_070 0.1113894449 transcription factor TF Family: ERF hypothetical protein POPTR_0002s24750g [Populus trichocarpa]
7 Hb_001571_030 0.112966837 - - PREDICTED: uncharacterized protein LOC105640040 isoform X1 [Jatropha curcas]
8 Hb_007576_070 0.1150068439 - - PREDICTED: uncharacterized protein LOC105640040 isoform X3 [Jatropha curcas]
9 Hb_161549_010 0.1150743278 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001396_070 0.1163933706 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003925_060 0.1166836789 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
12 Hb_000732_070 0.1209439746 - - PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
13 Hb_012305_140 0.1213245817 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
14 Hb_002056_100 0.1226461548 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
15 Hb_007849_050 0.1243571775 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
16 Hb_000603_190 0.1289045725 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
17 Hb_003734_080 0.1307347999 - - myosin vIII, putative [Ricinus communis]
18 Hb_011930_100 0.1333810049 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
19 Hb_006615_030 0.1348813157 - - prolyl oligopeptidase family protein [Populus trichocarpa]
20 Hb_003992_180 0.1352456707 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000805_200 Hb_000805_200 Hb_005694_130 Hb_005694_130 Hb_000805_200--Hb_005694_130 Hb_000609_110 Hb_000609_110 Hb_000805_200--Hb_000609_110 Hb_000836_540 Hb_000836_540 Hb_000805_200--Hb_000836_540 Hb_027380_210 Hb_027380_210 Hb_000805_200--Hb_027380_210 Hb_003001_070 Hb_003001_070 Hb_000805_200--Hb_003001_070 Hb_001571_030 Hb_001571_030 Hb_000805_200--Hb_001571_030 Hb_005694_130--Hb_003001_070 Hb_005694_130--Hb_000609_110 Hb_012305_140 Hb_012305_140 Hb_005694_130--Hb_012305_140 Hb_003992_180 Hb_003992_180 Hb_005694_130--Hb_003992_180 Hb_000454_140 Hb_000454_140 Hb_005694_130--Hb_000454_140 Hb_000609_110--Hb_027380_210 Hb_000609_110--Hb_000836_540 Hb_000609_110--Hb_003001_070 Hb_000609_110--Hb_003992_180 Hb_000836_540--Hb_005694_130 Hb_001369_030 Hb_001369_030 Hb_000836_540--Hb_001369_030 Hb_003925_060 Hb_003925_060 Hb_000836_540--Hb_003925_060 Hb_000453_230 Hb_000453_230 Hb_000836_540--Hb_000453_230 Hb_002056_100 Hb_002056_100 Hb_000836_540--Hb_002056_100 Hb_161549_010 Hb_161549_010 Hb_027380_210--Hb_161549_010 Hb_027380_210--Hb_000453_230 Hb_027380_210--Hb_005694_130 Hb_027380_210--Hb_000836_540 Hb_000212_300 Hb_000212_300 Hb_027380_210--Hb_000212_300 Hb_007849_050 Hb_007849_050 Hb_003001_070--Hb_007849_050 Hb_003001_070--Hb_000454_140 Hb_003001_070--Hb_012305_140 Hb_003001_070--Hb_003992_180 Hb_003090_150 Hb_003090_150 Hb_001571_030--Hb_003090_150 Hb_001250_040 Hb_001250_040 Hb_001571_030--Hb_001250_040 Hb_007576_070 Hb_007576_070 Hb_001571_030--Hb_007576_070 Hb_001571_030--Hb_027380_210 Hb_000136_020 Hb_000136_020 Hb_001571_030--Hb_000136_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.26458 19.787 18.5269 7.3043 6.29061 5.87468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.17582 2.59345 3.09959 3.03411 13.4069

CAGE analysis