Hb_000805_240

Information

Type -
Description -
Location Contig805: 228055-232483
Sequence    

Annotation

kegg
ID tcc:TCM_041819
description Rab5-interacting family protein
nr
ID XP_012067020.1
description PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LCP8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02985 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58991: 228042-232367
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000805_240 0.0 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
2 Hb_021068_040 0.069510503 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
3 Hb_006615_240 0.069548135 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
4 Hb_009615_070 0.0711122426 - - type X protein phosphatase-II [Populus trichocarpa]
5 Hb_008071_020 0.0726017173 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
6 Hb_004696_080 0.0730004498 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
7 Hb_152784_010 0.0730669509 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]
8 Hb_000261_140 0.0737135561 - - -
9 Hb_000608_050 0.0746908947 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
10 Hb_000701_100 0.0747211115 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
11 Hb_000390_300 0.0752886045 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
12 Hb_000329_110 0.0755587808 - - PREDICTED: uncharacterized protein LOC105643142 [Jatropha curcas]
13 Hb_004143_150 0.0770579256 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]
14 Hb_004899_370 0.07755111 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
15 Hb_000005_090 0.0788652131 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
16 Hb_024439_010 0.0794985952 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
17 Hb_002105_100 0.0803727912 - - protein with unknown function [Ricinus communis]
18 Hb_000001_060 0.080643219 - - PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 [Jatropha curcas]
19 Hb_004157_040 0.0808453649 - - Rab2 [Hevea brasiliensis]
20 Hb_000327_380 0.0810675154 - - hypothetical protein JCGZ_06621 [Jatropha curcas]

Gene co-expression network

sample Hb_000805_240 Hb_000805_240 Hb_021068_040 Hb_021068_040 Hb_000805_240--Hb_021068_040 Hb_006615_240 Hb_006615_240 Hb_000805_240--Hb_006615_240 Hb_009615_070 Hb_009615_070 Hb_000805_240--Hb_009615_070 Hb_008071_020 Hb_008071_020 Hb_000805_240--Hb_008071_020 Hb_004696_080 Hb_004696_080 Hb_000805_240--Hb_004696_080 Hb_152784_010 Hb_152784_010 Hb_000805_240--Hb_152784_010 Hb_005846_040 Hb_005846_040 Hb_021068_040--Hb_005846_040 Hb_021068_040--Hb_006615_240 Hb_000205_090 Hb_000205_090 Hb_021068_040--Hb_000205_090 Hb_003582_060 Hb_003582_060 Hb_021068_040--Hb_003582_060 Hb_003151_040 Hb_003151_040 Hb_021068_040--Hb_003151_040 Hb_006615_240--Hb_003582_060 Hb_010098_050 Hb_010098_050 Hb_006615_240--Hb_010098_050 Hb_000390_300 Hb_000390_300 Hb_006615_240--Hb_000390_300 Hb_004109_170 Hb_004109_170 Hb_006615_240--Hb_004109_170 Hb_000003_230 Hb_000003_230 Hb_006615_240--Hb_000003_230 Hb_001341_150 Hb_001341_150 Hb_006615_240--Hb_001341_150 Hb_023278_020 Hb_023278_020 Hb_009615_070--Hb_023278_020 Hb_003605_090 Hb_003605_090 Hb_009615_070--Hb_003605_090 Hb_007009_010 Hb_007009_010 Hb_009615_070--Hb_007009_010 Hb_004889_010 Hb_004889_010 Hb_009615_070--Hb_004889_010 Hb_004899_370 Hb_004899_370 Hb_009615_070--Hb_004899_370 Hb_089032_030 Hb_089032_030 Hb_009615_070--Hb_089032_030 Hb_001931_010 Hb_001931_010 Hb_008071_020--Hb_001931_010 Hb_001279_080 Hb_001279_080 Hb_008071_020--Hb_001279_080 Hb_028396_010 Hb_028396_010 Hb_008071_020--Hb_028396_010 Hb_026053_020 Hb_026053_020 Hb_008071_020--Hb_026053_020 Hb_006326_040 Hb_006326_040 Hb_008071_020--Hb_006326_040 Hb_000045_310 Hb_000045_310 Hb_008071_020--Hb_000045_310 Hb_024439_010 Hb_024439_010 Hb_004696_080--Hb_024439_010 Hb_000638_250 Hb_000638_250 Hb_004696_080--Hb_000638_250 Hb_004696_080--Hb_152784_010 Hb_148121_040 Hb_148121_040 Hb_004696_080--Hb_148121_040 Hb_000291_080 Hb_000291_080 Hb_004696_080--Hb_000291_080 Hb_152784_010--Hb_000638_250 Hb_000317_390 Hb_000317_390 Hb_152784_010--Hb_000317_390 Hb_001318_250 Hb_001318_250 Hb_152784_010--Hb_001318_250 Hb_033594_150 Hb_033594_150 Hb_152784_010--Hb_033594_150 Hb_000103_320 Hb_000103_320 Hb_152784_010--Hb_000103_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.3398 17.1708 20.3308 35.3737 15.3262 16.9214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.533 50.1008 34.3576 16.7545 15.2615

CAGE analysis