Hb_000805_260

Information

Type -
Description -
Location Contig805: 244202-255234
Sequence    

Annotation

kegg
ID vvi:100253495
description uncharacterized LOC100253495
nr
ID XP_012092562.1
description PREDICTED: uncharacterized protein LOC105650295 isoform X1 [Jatropha curcas]
swissprot
ID P37707
description B2 protein OS=Daucus carota PE=2 SV=1
trembl
ID A0A067JLS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05304 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58996: 244282-253517 , PASA_asmbl_58997: 245580-253544 , PASA_asmbl_58999: 244497-244714
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000805_260 0.0 - - PREDICTED: uncharacterized protein LOC105650295 isoform X1 [Jatropha curcas]
2 Hb_002675_040 0.078906401 - - ran-binding protein, putative [Ricinus communis]
3 Hb_033594_020 0.0852215994 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
4 Hb_003656_160 0.1012545367 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
5 Hb_008143_030 0.1037904482 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
6 Hb_001900_120 0.1038717597 - - PREDICTED: uncharacterized protein LOC105632666 [Jatropha curcas]
7 Hb_002301_220 0.108681079 transcription factor TF Family: C3H PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]
8 Hb_007305_010 0.109921423 - - PREDICTED: girdin-like [Jatropha curcas]
9 Hb_002276_050 0.1103473299 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
10 Hb_000104_080 0.1115525046 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
11 Hb_007885_070 0.1128795873 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
12 Hb_000417_160 0.1128961799 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
13 Hb_000345_530 0.1136645096 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
14 Hb_002221_050 0.113752332 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
15 Hb_008554_120 0.1137557685 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
16 Hb_001235_200 0.1149407478 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006449_050 0.1150628239 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
18 Hb_003058_110 0.1153675471 - - PREDICTED: alpha-mannosidase isoform X2 [Populus euphratica]
19 Hb_000320_380 0.1153955472 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
20 Hb_000343_210 0.1157494303 - - ran-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000805_260 Hb_000805_260 Hb_002675_040 Hb_002675_040 Hb_000805_260--Hb_002675_040 Hb_033594_020 Hb_033594_020 Hb_000805_260--Hb_033594_020 Hb_003656_160 Hb_003656_160 Hb_000805_260--Hb_003656_160 Hb_008143_030 Hb_008143_030 Hb_000805_260--Hb_008143_030 Hb_001900_120 Hb_001900_120 Hb_000805_260--Hb_001900_120 Hb_002301_220 Hb_002301_220 Hb_000805_260--Hb_002301_220 Hb_002675_040--Hb_033594_020 Hb_017895_020 Hb_017895_020 Hb_002675_040--Hb_017895_020 Hb_000343_210 Hb_000343_210 Hb_002675_040--Hb_000343_210 Hb_002675_040--Hb_001900_120 Hb_000329_130 Hb_000329_130 Hb_002675_040--Hb_000329_130 Hb_008725_130 Hb_008725_130 Hb_002675_040--Hb_008725_130 Hb_046615_020 Hb_046615_020 Hb_033594_020--Hb_046615_020 Hb_033594_020--Hb_000343_210 Hb_007885_070 Hb_007885_070 Hb_033594_020--Hb_007885_070 Hb_033594_020--Hb_003656_160 Hb_033594_020--Hb_017895_020 Hb_004678_060 Hb_004678_060 Hb_003656_160--Hb_004678_060 Hb_003656_160--Hb_002301_220 Hb_003656_160--Hb_000343_210 Hb_003656_160--Hb_046615_020 Hb_002007_350 Hb_002007_350 Hb_003656_160--Hb_002007_350 Hb_002400_180 Hb_002400_180 Hb_003656_160--Hb_002400_180 Hb_001584_290 Hb_001584_290 Hb_008143_030--Hb_001584_290 Hb_108216_040 Hb_108216_040 Hb_008143_030--Hb_108216_040 Hb_000035_040 Hb_000035_040 Hb_008143_030--Hb_000035_040 Hb_000640_320 Hb_000640_320 Hb_008143_030--Hb_000640_320 Hb_000104_080 Hb_000104_080 Hb_008143_030--Hb_000104_080 Hb_002652_040 Hb_002652_040 Hb_008143_030--Hb_002652_040 Hb_001900_120--Hb_017895_020 Hb_001900_120--Hb_000329_130 Hb_001050_010 Hb_001050_010 Hb_001900_120--Hb_001050_010 Hb_011609_170 Hb_011609_170 Hb_001900_120--Hb_011609_170 Hb_001900_120--Hb_008725_130 Hb_001541_020 Hb_001541_020 Hb_002301_220--Hb_001541_020 Hb_008554_120 Hb_008554_120 Hb_002301_220--Hb_008554_120 Hb_000032_320 Hb_000032_320 Hb_002301_220--Hb_000032_320 Hb_001486_080 Hb_001486_080 Hb_002301_220--Hb_001486_080 Hb_022408_010 Hb_022408_010 Hb_002301_220--Hb_022408_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
114.947 38.8751 36.815 15.298 92.0776 58.3796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.1268 20.0802 41.2588 32.8959 28.3543

CAGE analysis