Hb_000806_030

Information

Type transcription factor
Description TF Family: C2H2
Location Contig806: 8875-18735
Sequence    

Annotation

kegg
ID rcu:RCOM_0263520
description hypothetical protein
nr
ID XP_012093284.1
description PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
swissprot
ID Q6BDA0
description Probable lysine-specific demethylase ELF6 OS=Arabidopsis thaliana GN=ELF6 PE=1 SV=1
trembl
ID A0A067LAY8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20073 PE=4 SV=1
Gene Ontology
ID GO:0003676
description probable lysine-specific demethylase elf6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59043: 11097-11259 , PASA_asmbl_59044: 12507-16737
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000806_030 0.0 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
2 Hb_004659_090 0.0665003812 - - PREDICTED: uncharacterized protein LOC105629935 [Jatropha curcas]
3 Hb_002056_100 0.0716584012 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
4 Hb_000645_130 0.0718914964 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
5 Hb_001279_040 0.0747504686 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
6 Hb_000179_190 0.077419358 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
7 Hb_003929_210 0.0794790028 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
8 Hb_017214_040 0.0805523298 - - PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X1 [Jatropha curcas]
9 Hb_001178_030 0.083257648 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]
10 Hb_000958_050 0.0842304007 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
11 Hb_003918_030 0.0855302768 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
12 Hb_008642_060 0.0883206647 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
13 Hb_003939_060 0.090040424 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000110_350 0.0915493739 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
15 Hb_000445_060 0.0931564001 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
16 Hb_009302_030 0.0936227155 - - hypothetical protein RCOM_1176340 [Ricinus communis]
17 Hb_000358_220 0.0943916689 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
18 Hb_000030_140 0.0951981367 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
19 Hb_000008_280 0.0954061359 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
20 Hb_001563_010 0.0962955333 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]

Gene co-expression network

sample Hb_000806_030 Hb_000806_030 Hb_004659_090 Hb_004659_090 Hb_000806_030--Hb_004659_090 Hb_002056_100 Hb_002056_100 Hb_000806_030--Hb_002056_100 Hb_000645_130 Hb_000645_130 Hb_000806_030--Hb_000645_130 Hb_001279_040 Hb_001279_040 Hb_000806_030--Hb_001279_040 Hb_000179_190 Hb_000179_190 Hb_000806_030--Hb_000179_190 Hb_003929_210 Hb_003929_210 Hb_000806_030--Hb_003929_210 Hb_004659_090--Hb_000645_130 Hb_170077_010 Hb_170077_010 Hb_004659_090--Hb_170077_010 Hb_000958_050 Hb_000958_050 Hb_004659_090--Hb_000958_050 Hb_009302_030 Hb_009302_030 Hb_004659_090--Hb_009302_030 Hb_000110_350 Hb_000110_350 Hb_004659_090--Hb_000110_350 Hb_002056_100--Hb_000645_130 Hb_000500_300 Hb_000500_300 Hb_002056_100--Hb_000500_300 Hb_002056_100--Hb_009302_030 Hb_002056_100--Hb_004659_090 Hb_000030_140 Hb_000030_140 Hb_002056_100--Hb_000030_140 Hb_000645_130--Hb_009302_030 Hb_000645_130--Hb_000958_050 Hb_003939_060 Hb_003939_060 Hb_000645_130--Hb_003939_060 Hb_000645_130--Hb_000500_300 Hb_000181_340 Hb_000181_340 Hb_001279_040--Hb_000181_340 Hb_000193_330 Hb_000193_330 Hb_001279_040--Hb_000193_330 Hb_003918_030 Hb_003918_030 Hb_001279_040--Hb_003918_030 Hb_005214_140 Hb_005214_140 Hb_001279_040--Hb_005214_140 Hb_001563_010 Hb_001563_010 Hb_001279_040--Hb_001563_010 Hb_000179_190--Hb_000110_350 Hb_017214_040 Hb_017214_040 Hb_000179_190--Hb_017214_040 Hb_000445_060 Hb_000445_060 Hb_000179_190--Hb_000445_060 Hb_000179_190--Hb_003929_210 Hb_005305_100 Hb_005305_100 Hb_000179_190--Hb_005305_100 Hb_000179_190--Hb_170077_010 Hb_003929_210--Hb_003939_060 Hb_003929_210--Hb_000110_350 Hb_033312_130 Hb_033312_130 Hb_003929_210--Hb_033312_130 Hb_000996_020 Hb_000996_020 Hb_003929_210--Hb_000996_020 Hb_000358_220 Hb_000358_220 Hb_003929_210--Hb_000358_220 Hb_002768_050 Hb_002768_050 Hb_003929_210--Hb_002768_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.41693 5.24821 3.98876 2.39889 1.86929 2.03133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.38046 1.1736 2.23388 1.94263 4.82769

CAGE analysis