Hb_000808_050

Information

Type -
Description -
Location Contig808: 51230-54310
Sequence    

Annotation

kegg
ID rcu:RCOM_1434480
description exonuclease, putative (EC:2.7.7.7)
nr
ID XP_002512483.1
description exonuclease, putative [Ricinus communis]
swissprot
ID Q682U6
description Exonuclease DPD1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=DPD1 PE=1 SV=1
trembl
ID B9RFG4
description Exonuclease, putative OS=Ricinus communis GN=RCOM_1434480 PE=4 SV=1
Gene Ontology
ID GO:0005739
description exonuclease chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59077: 52319-52622
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000808_050 0.0 - - exonuclease, putative [Ricinus communis]
2 Hb_000141_250 0.0752102277 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
3 Hb_002542_020 0.0802731373 - - PREDICTED: uncharacterized protein LOC105634003 isoform X1 [Jatropha curcas]
4 Hb_008511_130 0.0839734285 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]
5 Hb_000599_180 0.0841864005 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_006817_010 0.0845857974 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
7 Hb_001472_060 0.086151246 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [Jatropha curcas]
8 Hb_012725_070 0.087584632 - - PREDICTED: uncharacterized protein LOC105636534 isoform X1 [Jatropha curcas]
9 Hb_000390_170 0.0911207827 - - PREDICTED: V-type proton ATPase subunit H [Jatropha curcas]
10 Hb_000019_150 0.0920845858 - - PREDICTED: uncharacterized protein LOC105630208 [Jatropha curcas]
11 Hb_021409_180 0.0937546197 - - PREDICTED: glutamine-dependent NAD(+) synthetase [Jatropha curcas]
12 Hb_002197_020 0.0967395783 - - DNA-directed RNA polymerase family protein [Theobroma cacao]
13 Hb_002997_080 0.0969113915 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
14 Hb_003531_080 0.0974297203 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
15 Hb_005288_150 0.0980530937 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
16 Hb_000025_030 0.0982799294 - - transcription factor, putative [Ricinus communis]
17 Hb_000046_040 0.0985048236 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001158_070 0.1003289405 - - Protein DEK, putative [Ricinus communis]
19 Hb_000136_110 0.1005051973 - - hypothetical protein B456_011G031000, partial [Gossypium raimondii]
20 Hb_023344_120 0.1020274705 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000808_050 Hb_000808_050 Hb_000141_250 Hb_000141_250 Hb_000808_050--Hb_000141_250 Hb_002542_020 Hb_002542_020 Hb_000808_050--Hb_002542_020 Hb_008511_130 Hb_008511_130 Hb_000808_050--Hb_008511_130 Hb_000599_180 Hb_000599_180 Hb_000808_050--Hb_000599_180 Hb_006817_010 Hb_006817_010 Hb_000808_050--Hb_006817_010 Hb_001472_060 Hb_001472_060 Hb_000808_050--Hb_001472_060 Hb_000141_250--Hb_008511_130 Hb_000230_560 Hb_000230_560 Hb_000141_250--Hb_000230_560 Hb_005288_150 Hb_005288_150 Hb_000141_250--Hb_005288_150 Hb_002997_080 Hb_002997_080 Hb_000141_250--Hb_002997_080 Hb_000390_170 Hb_000390_170 Hb_000141_250--Hb_000390_170 Hb_002197_020 Hb_002197_020 Hb_000141_250--Hb_002197_020 Hb_002542_020--Hb_000599_180 Hb_002542_020--Hb_000141_250 Hb_000442_150 Hb_000442_150 Hb_002542_020--Hb_000442_150 Hb_002542_020--Hb_008511_130 Hb_002078_020 Hb_002078_020 Hb_002542_020--Hb_002078_020 Hb_008511_130--Hb_002997_080 Hb_008511_130--Hb_000230_560 Hb_008511_130--Hb_000390_170 Hb_000618_040 Hb_000618_040 Hb_008511_130--Hb_000618_040 Hb_000094_300 Hb_000094_300 Hb_008511_130--Hb_000094_300 Hb_001001_080 Hb_001001_080 Hb_000599_180--Hb_001001_080 Hb_000050_190 Hb_000050_190 Hb_000599_180--Hb_000050_190 Hb_021409_180 Hb_021409_180 Hb_000599_180--Hb_021409_180 Hb_000340_420 Hb_000340_420 Hb_000599_180--Hb_000340_420 Hb_000866_010 Hb_000866_010 Hb_006817_010--Hb_000866_010 Hb_012725_070 Hb_012725_070 Hb_006817_010--Hb_012725_070 Hb_006817_010--Hb_000390_170 Hb_000690_160 Hb_000690_160 Hb_006817_010--Hb_000690_160 Hb_000053_110 Hb_000053_110 Hb_006817_010--Hb_000053_110 Hb_003531_080 Hb_003531_080 Hb_001472_060--Hb_003531_080 Hb_004097_130 Hb_004097_130 Hb_001472_060--Hb_004097_130 Hb_001472_060--Hb_021409_180 Hb_001205_120 Hb_001205_120 Hb_001472_060--Hb_001205_120 Hb_000019_150 Hb_000019_150 Hb_001472_060--Hb_000019_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.37695 0.875083 2.34717 1.55108 1.34277 1.52569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.58595 1.01771 2.07388 0.9473 1.08562

CAGE analysis