Hb_000808_060

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig808: 58605-59698
Sequence    

Annotation

kegg
ID pop:POPTR_0005s02040g
description zinc finger family protein
nr
ID XP_012088941.1
description PREDICTED: GATA transcription factor 16-like [Jatropha curcas]
swissprot
ID Q8LG10
description GATA transcription factor 15 OS=Arabidopsis thaliana GN=GATA15 PE=2 SV=2
trembl
ID A0A067JV47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23252 PE=4 SV=1
Gene Ontology
ID GO:0005488
description gata transcription factor 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000808_060 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Jatropha curcas]
2 Hb_074683_020 0.0995467833 - - PREDICTED: 60S ribosomal protein L27-3 [Jatropha curcas]
3 Hb_003581_110 0.1159869716 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
4 Hb_000264_060 0.1446411924 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
5 Hb_000093_130 0.1498195187 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
6 Hb_045502_010 0.1511843795 - - prefoldin subunit 1 [Jatropha curcas]
7 Hb_019871_020 0.1577332217 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
8 Hb_010189_010 0.1595352055 - - -
9 Hb_004206_040 0.1608450992 - - cytochrome P450, putative [Ricinus communis]
10 Hb_001473_190 0.1622017417 - - 50S ribosomal protein L20 [Hevea brasiliensis]
11 Hb_001016_060 0.1629593669 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001754_170 0.1629935032 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
13 Hb_035360_010 0.1654535059 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
14 Hb_006173_020 0.1664717835 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
15 Hb_179511_010 0.168984985 - - -
16 Hb_000544_120 0.1702303881 - - PREDICTED: thymidylate kinase [Jatropha curcas]
17 Hb_007534_040 0.1703214529 - - PREDICTED: uncharacterized protein LOC105635538 [Jatropha curcas]
18 Hb_063409_020 0.1707078462 - - Calcium-binding protein, putative [Ricinus communis]
19 Hb_000392_280 0.1707313533 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
20 Hb_001227_110 0.1722790452 - - U2 snrnp auxiliary factor, small subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_000808_060 Hb_000808_060 Hb_074683_020 Hb_074683_020 Hb_000808_060--Hb_074683_020 Hb_003581_110 Hb_003581_110 Hb_000808_060--Hb_003581_110 Hb_000264_060 Hb_000264_060 Hb_000808_060--Hb_000264_060 Hb_000093_130 Hb_000093_130 Hb_000808_060--Hb_000093_130 Hb_045502_010 Hb_045502_010 Hb_000808_060--Hb_045502_010 Hb_019871_020 Hb_019871_020 Hb_000808_060--Hb_019871_020 Hb_074683_020--Hb_000093_130 Hb_074683_020--Hb_000264_060 Hb_074683_020--Hb_003581_110 Hb_001227_110 Hb_001227_110 Hb_074683_020--Hb_001227_110 Hb_007416_200 Hb_007416_200 Hb_074683_020--Hb_007416_200 Hb_001016_060 Hb_001016_060 Hb_003581_110--Hb_001016_060 Hb_000392_280 Hb_000392_280 Hb_003581_110--Hb_000392_280 Hb_009801_010 Hb_009801_010 Hb_003581_110--Hb_009801_010 Hb_179511_010 Hb_179511_010 Hb_003581_110--Hb_179511_010 Hb_003581_110--Hb_045502_010 Hb_002405_020 Hb_002405_020 Hb_003581_110--Hb_002405_020 Hb_001348_140 Hb_001348_140 Hb_000264_060--Hb_001348_140 Hb_010298_020 Hb_010298_020 Hb_000264_060--Hb_010298_020 Hb_000322_170 Hb_000322_170 Hb_000264_060--Hb_000322_170 Hb_000264_060--Hb_000093_130 Hb_009615_110 Hb_009615_110 Hb_000264_060--Hb_009615_110 Hb_000093_130--Hb_001227_110 Hb_000116_570 Hb_000116_570 Hb_000093_130--Hb_000116_570 Hb_001473_190 Hb_001473_190 Hb_000093_130--Hb_001473_190 Hb_000025_750 Hb_000025_750 Hb_000093_130--Hb_000025_750 Hb_000093_130--Hb_007416_200 Hb_000619_070 Hb_000619_070 Hb_045502_010--Hb_000619_070 Hb_035360_010 Hb_035360_010 Hb_045502_010--Hb_035360_010 Hb_000038_150 Hb_000038_150 Hb_045502_010--Hb_000038_150 Hb_003673_020 Hb_003673_020 Hb_045502_010--Hb_003673_020 Hb_045502_010--Hb_000392_280 Hb_000608_340 Hb_000608_340 Hb_019871_020--Hb_000608_340 Hb_001582_030 Hb_001582_030 Hb_019871_020--Hb_001582_030 Hb_006173_020 Hb_006173_020 Hb_019871_020--Hb_006173_020 Hb_004531_090 Hb_004531_090 Hb_019871_020--Hb_004531_090 Hb_000185_090 Hb_000185_090 Hb_019871_020--Hb_000185_090 Hb_000940_040 Hb_000940_040 Hb_019871_020--Hb_000940_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.3773 6.21529 4.43696 0.629779 20.9311 20.8413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.41891 7.21594 1.00807 1.8819 0.670988

CAGE analysis