Hb_000808_070

Information

Type -
Description -
Location Contig808: 76672-81875
Sequence    

Annotation

kegg
ID rcu:RCOM_1434500
description importin alpha, putative
nr
ID XP_012088940.1
description PREDICTED: importin subunit alpha-2 [Jatropha curcas]
swissprot
ID Q96321
description Importin subunit alpha-1 OS=Arabidopsis thaliana GN=IMPA1 PE=1 SV=2
trembl
ID A0A067JKS1
description Importin subunit alpha OS=Jatropha curcas GN=JCGZ_23251 PE=3 SV=1
Gene Ontology
ID GO:0005634
description importin subunit alpha-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59078: 76729-81761 , PASA_asmbl_59079: 76740-81728
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000808_070 0.0 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
2 Hb_001301_230 0.0622110131 - - PREDICTED: uncharacterized protein LOC105632949 isoform X2 [Jatropha curcas]
3 Hb_003157_010 0.0877392084 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
4 Hb_006501_020 0.1088176857 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
5 Hb_018133_030 0.1172387709 - - Heme-binding protein, putative [Ricinus communis]
6 Hb_007257_050 0.117981435 - - protein with unknown function [Ricinus communis]
7 Hb_000932_070 0.118003272 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
8 Hb_009028_030 0.1182262289 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
9 Hb_000032_310 0.118615822 - - ring finger protein, putative [Ricinus communis]
10 Hb_002762_130 0.1187006997 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
11 Hb_000265_250 0.1194615478 - - auxilin, putative [Ricinus communis]
12 Hb_057451_010 0.1195348631 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
13 Hb_000640_200 0.1204054535 - - hypothetical protein RCOM_1346600 [Ricinus communis]
14 Hb_003710_040 0.1211827718 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
15 Hb_006185_020 0.1226037 - - PREDICTED: midasin [Jatropha curcas]
16 Hb_011465_030 0.1230167062 - - PREDICTED: B2 protein [Jatropha curcas]
17 Hb_141547_010 0.1246628806 - - PREDICTED: ARF guanine-nucleotide exchange factor GNOM [Jatropha curcas]
18 Hb_002316_050 0.128740026 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004899_070 0.1289013901 - - PREDICTED: RRP12-like protein [Jatropha curcas]
20 Hb_000997_030 0.1303245856 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]

Gene co-expression network

sample Hb_000808_070 Hb_000808_070 Hb_001301_230 Hb_001301_230 Hb_000808_070--Hb_001301_230 Hb_003157_010 Hb_003157_010 Hb_000808_070--Hb_003157_010 Hb_006501_020 Hb_006501_020 Hb_000808_070--Hb_006501_020 Hb_018133_030 Hb_018133_030 Hb_000808_070--Hb_018133_030 Hb_007257_050 Hb_007257_050 Hb_000808_070--Hb_007257_050 Hb_000932_070 Hb_000932_070 Hb_000808_070--Hb_000932_070 Hb_004899_070 Hb_004899_070 Hb_001301_230--Hb_004899_070 Hb_001301_230--Hb_006501_020 Hb_000265_250 Hb_000265_250 Hb_001301_230--Hb_000265_250 Hb_002477_150 Hb_002477_150 Hb_001301_230--Hb_002477_150 Hb_011465_030 Hb_011465_030 Hb_001301_230--Hb_011465_030 Hb_057451_010 Hb_057451_010 Hb_003157_010--Hb_057451_010 Hb_003157_010--Hb_006501_020 Hb_009028_030 Hb_009028_030 Hb_003157_010--Hb_009028_030 Hb_000640_200 Hb_000640_200 Hb_003157_010--Hb_000640_200 Hb_001989_020 Hb_001989_020 Hb_003157_010--Hb_001989_020 Hb_006501_020--Hb_000640_200 Hb_006588_050 Hb_006588_050 Hb_006501_020--Hb_006588_050 Hb_031069_020 Hb_031069_020 Hb_006501_020--Hb_031069_020 Hb_007904_180 Hb_007904_180 Hb_006501_020--Hb_007904_180 Hb_006501_020--Hb_004899_070 Hb_018133_030--Hb_009028_030 Hb_018133_030--Hb_057451_010 Hb_004449_050 Hb_004449_050 Hb_018133_030--Hb_004449_050 Hb_030827_060 Hb_030827_060 Hb_018133_030--Hb_030827_060 Hb_164010_070 Hb_164010_070 Hb_018133_030--Hb_164010_070 Hb_031089_030 Hb_031089_030 Hb_007257_050--Hb_031089_030 Hb_010584_010 Hb_010584_010 Hb_007257_050--Hb_010584_010 Hb_007257_050--Hb_009028_030 Hb_007257_050--Hb_000265_250 Hb_003349_010 Hb_003349_010 Hb_007257_050--Hb_003349_010 Hb_007257_050--Hb_003157_010 Hb_006683_040 Hb_006683_040 Hb_000932_070--Hb_006683_040 Hb_007894_130 Hb_007894_130 Hb_000932_070--Hb_007894_130 Hb_000340_110 Hb_000340_110 Hb_000932_070--Hb_000340_110 Hb_018301_010 Hb_018301_010 Hb_000932_070--Hb_018301_010 Hb_001511_110 Hb_001511_110 Hb_000932_070--Hb_001511_110 Hb_157966_010 Hb_157966_010 Hb_000932_070--Hb_157966_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
103.281 238.473 27.4814 51.7298 129.412 207.23
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.5026 25.3088 45.6138 79.7954 32.516

CAGE analysis