Hb_000808_080

Information

Type -
Description -
Location Contig808: 93037-94381
Sequence    

Annotation

kegg
ID pop:POPTR_0005s02020g
description DNAJ heat shock N-terminal domain-containing family protein
nr
ID XP_012088939.1
description PREDICTED: dnaJ homolog subfamily B member 3 [Jatropha curcas]
swissprot
ID Q6P642
description DnaJ homolog subfamily B member 6 OS=Xenopus tropicalis GN=dnajb6 PE=2 SV=1
trembl
ID A0A067JHJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23249 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59080: 93014-94635 , PASA_asmbl_59081: 94843-98460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000808_080 0.0 - - PREDICTED: dnaJ homolog subfamily B member 3 [Jatropha curcas]
2 Hb_005488_060 0.1299884384 - - cytochrome P450, putative [Ricinus communis]
3 Hb_008489_020 0.1323769971 - - PREDICTED: uncharacterized protein LOC105644663 [Jatropha curcas]
4 Hb_001898_090 0.1383420441 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
5 Hb_009767_090 0.1472022518 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001085_250 0.1509158098 transcription factor TF Family: G2-like PREDICTED: myb family transcription factor APL isoform X2 [Jatropha curcas]
7 Hb_000640_320 0.1524255245 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
8 Hb_007904_120 0.1550280404 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
9 Hb_000270_160 0.1556754885 - - PREDICTED: uncharacterized protein LOC102625351 [Citrus sinensis]
10 Hb_003216_120 0.1556794575 - - PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X2 [Jatropha curcas]
11 Hb_095595_010 0.1566158534 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
12 Hb_000982_160 0.1585336016 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
13 Hb_002043_170 0.1600754772 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
14 Hb_000096_180 0.1614817418 - - PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like isoform X1 [Jatropha curcas]
15 Hb_006788_160 0.1645491227 - - hypothetical protein POPTR_0002s04680g [Populus trichocarpa]
16 Hb_007803_060 0.1646532541 - - PREDICTED: uncharacterized protein LOC105632794 [Jatropha curcas]
17 Hb_134364_010 0.1684421037 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Jatropha curcas]
18 Hb_006824_060 0.1684848036 - - PREDICTED: uncharacterized protein LOC105650737 [Jatropha curcas]
19 Hb_000010_390 0.1698857394 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
20 Hb_000107_400 0.1702258079 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Jatropha curcas]

Gene co-expression network

sample Hb_000808_080 Hb_000808_080 Hb_005488_060 Hb_005488_060 Hb_000808_080--Hb_005488_060 Hb_008489_020 Hb_008489_020 Hb_000808_080--Hb_008489_020 Hb_001898_090 Hb_001898_090 Hb_000808_080--Hb_001898_090 Hb_009767_090 Hb_009767_090 Hb_000808_080--Hb_009767_090 Hb_001085_250 Hb_001085_250 Hb_000808_080--Hb_001085_250 Hb_000640_320 Hb_000640_320 Hb_000808_080--Hb_000640_320 Hb_005488_060--Hb_008489_020 Hb_002193_010 Hb_002193_010 Hb_005488_060--Hb_002193_010 Hb_009393_050 Hb_009393_050 Hb_005488_060--Hb_009393_050 Hb_001638_250 Hb_001638_250 Hb_005488_060--Hb_001638_250 Hb_000982_160 Hb_000982_160 Hb_005488_060--Hb_000982_160 Hb_002863_040 Hb_002863_040 Hb_005488_060--Hb_002863_040 Hb_000170_190 Hb_000170_190 Hb_008489_020--Hb_000170_190 Hb_012286_010 Hb_012286_010 Hb_008489_020--Hb_012286_010 Hb_002084_020 Hb_002084_020 Hb_008489_020--Hb_002084_020 Hb_002601_130 Hb_002601_130 Hb_008489_020--Hb_002601_130 Hb_006915_070 Hb_006915_070 Hb_008489_020--Hb_006915_070 Hb_000849_020 Hb_000849_020 Hb_001898_090--Hb_000849_020 Hb_000010_180 Hb_000010_180 Hb_001898_090--Hb_000010_180 Hb_000010_390 Hb_000010_390 Hb_001898_090--Hb_000010_390 Hb_000107_400 Hb_000107_400 Hb_001898_090--Hb_000107_400 Hb_001898_090--Hb_012286_010 Hb_002749_110 Hb_002749_110 Hb_001898_090--Hb_002749_110 Hb_009767_090--Hb_000640_320 Hb_000058_040 Hb_000058_040 Hb_009767_090--Hb_000058_040 Hb_000540_150 Hb_000540_150 Hb_009767_090--Hb_000540_150 Hb_005237_060 Hb_005237_060 Hb_009767_090--Hb_005237_060 Hb_028707_090 Hb_028707_090 Hb_009767_090--Hb_028707_090 Hb_002043_170 Hb_002043_170 Hb_009767_090--Hb_002043_170 Hb_007904_120 Hb_007904_120 Hb_001085_250--Hb_007904_120 Hb_007262_020 Hb_007262_020 Hb_001085_250--Hb_007262_020 Hb_001863_260 Hb_001863_260 Hb_001085_250--Hb_001863_260 Hb_007451_050 Hb_007451_050 Hb_001085_250--Hb_007451_050 Hb_001377_320 Hb_001377_320 Hb_001085_250--Hb_001377_320 Hb_006824_060 Hb_006824_060 Hb_001085_250--Hb_006824_060 Hb_000640_320--Hb_002043_170 Hb_108216_040 Hb_108216_040 Hb_000640_320--Hb_108216_040 Hb_008143_030 Hb_008143_030 Hb_000640_320--Hb_008143_030 Hb_000714_050 Hb_000714_050 Hb_000640_320--Hb_000714_050 Hb_002400_180 Hb_002400_180 Hb_000640_320--Hb_002400_180 Hb_000343_210 Hb_000343_210 Hb_000640_320--Hb_000343_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
85.265 44.4372 20.7766 15.2022 68.0471 74.7851
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.2772 14.3173 21.1453 7.1648 65.6772

CAGE analysis