Hb_000808_110

Information

Type -
Description -
Location Contig808: 123987-126370
Sequence    

Annotation

kegg
ID pop:POPTR_0005s02000g
description pentatricopeptide repeat-containing family protein
nr
ID XP_012088937.1
description PREDICTED: uncharacterized protein LOC105647448 isoform X4 [Jatropha curcas]
swissprot
ID Q9ZN70
description Exopolyphosphatase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=ppx PE=3 SV=1
trembl
ID A0A067JV42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23247 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000808_110 0.0 - - PREDICTED: uncharacterized protein LOC105647448 isoform X4 [Jatropha curcas]
2 Hb_000836_350 0.1414853747 - - PREDICTED: uncharacterized protein LOC105642938 isoform X2 [Jatropha curcas]
3 Hb_008494_030 0.1424855774 - - catalytic, putative [Ricinus communis]
4 Hb_006569_040 0.1578277069 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
5 Hb_002107_050 0.1588641348 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
6 Hb_001623_490 0.1589270982 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
7 Hb_000331_340 0.1594545043 - - PREDICTED: uncharacterized protein LOC105640234 [Jatropha curcas]
8 Hb_003071_030 0.1606542798 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
9 Hb_000327_330 0.1642699122 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005235_070 0.1644014438 - - PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]
11 Hb_003529_140 0.1647591855 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
12 Hb_002447_050 0.1656268955 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000665_270 0.1656560557 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
14 Hb_003925_060 0.1658235255 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
15 Hb_172632_130 0.1663863746 - - hypothetical protein JCGZ_22584 [Jatropha curcas]
16 Hb_000302_190 0.1668245437 - - PREDICTED: uncharacterized protein At3g49140-like [Jatropha curcas]
17 Hb_004116_160 0.1679545655 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
18 Hb_004158_050 0.1686071476 - - hypothetical protein JCGZ_09026 [Jatropha curcas]
19 Hb_000663_020 0.1689160032 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
20 Hb_012779_080 0.1697416396 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000808_110 Hb_000808_110 Hb_000836_350 Hb_000836_350 Hb_000808_110--Hb_000836_350 Hb_008494_030 Hb_008494_030 Hb_000808_110--Hb_008494_030 Hb_006569_040 Hb_006569_040 Hb_000808_110--Hb_006569_040 Hb_002107_050 Hb_002107_050 Hb_000808_110--Hb_002107_050 Hb_001623_490 Hb_001623_490 Hb_000808_110--Hb_001623_490 Hb_000331_340 Hb_000331_340 Hb_000808_110--Hb_000331_340 Hb_155025_010 Hb_155025_010 Hb_000836_350--Hb_155025_010 Hb_005235_070 Hb_005235_070 Hb_000836_350--Hb_005235_070 Hb_000836_350--Hb_002107_050 Hb_000836_350--Hb_006569_040 Hb_000140_440 Hb_000140_440 Hb_000836_350--Hb_000140_440 Hb_002218_020 Hb_002218_020 Hb_000836_350--Hb_002218_020 Hb_001663_130 Hb_001663_130 Hb_008494_030--Hb_001663_130 Hb_004158_050 Hb_004158_050 Hb_008494_030--Hb_004158_050 Hb_008494_030--Hb_001623_490 Hb_001999_320 Hb_001999_320 Hb_008494_030--Hb_001999_320 Hb_003849_160 Hb_003849_160 Hb_008494_030--Hb_003849_160 Hb_003687_080 Hb_003687_080 Hb_008494_030--Hb_003687_080 Hb_003529_140 Hb_003529_140 Hb_006569_040--Hb_003529_140 Hb_010174_090 Hb_010174_090 Hb_006569_040--Hb_010174_090 Hb_007283_010 Hb_007283_010 Hb_006569_040--Hb_007283_010 Hb_000826_030 Hb_000826_030 Hb_006569_040--Hb_000826_030 Hb_000663_020 Hb_000663_020 Hb_006569_040--Hb_000663_020 Hb_003752_070 Hb_003752_070 Hb_006569_040--Hb_003752_070 Hb_003883_010 Hb_003883_010 Hb_002107_050--Hb_003883_010 Hb_010620_050 Hb_010620_050 Hb_002107_050--Hb_010620_050 Hb_003071_030 Hb_003071_030 Hb_002107_050--Hb_003071_030 Hb_160271_010 Hb_160271_010 Hb_002107_050--Hb_160271_010 Hb_002107_050--Hb_005235_070 Hb_012779_080 Hb_012779_080 Hb_002107_050--Hb_012779_080 Hb_001623_490--Hb_012779_080 Hb_000327_330 Hb_000327_330 Hb_001623_490--Hb_000327_330 Hb_005665_090 Hb_005665_090 Hb_001623_490--Hb_005665_090 Hb_002026_090 Hb_002026_090 Hb_001623_490--Hb_002026_090 Hb_001623_490--Hb_002218_020 Hb_016448_010 Hb_016448_010 Hb_001623_490--Hb_016448_010 Hb_002447_050 Hb_002447_050 Hb_000331_340--Hb_002447_050 Hb_003683_030 Hb_003683_030 Hb_000331_340--Hb_003683_030 Hb_000302_190 Hb_000302_190 Hb_000331_340--Hb_000302_190 Hb_000331_340--Hb_003529_140 Hb_004871_010 Hb_004871_010 Hb_000331_340--Hb_004871_010 Hb_000418_090 Hb_000418_090 Hb_000331_340--Hb_000418_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.805774 0.885216 1.94604 1.21038 0.754787 0.437175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.296406 0.63284 0 0.427252 1.65098

CAGE analysis