Hb_000808_130

Information

Type -
Description -
Location Contig808: 131922-139106
Sequence    

Annotation

kegg
ID rcu:RCOM_1434540
description 3-5 exonuclease, putative
nr
ID XP_002512489.1
description 3-5 exonuclease, putative [Ricinus communis]
swissprot
ID Q8N9H8
description Exonuclease mut-7 homolog OS=Homo sapiens GN=EXD3 PE=2 SV=3
trembl
ID B9RFH0
description 3-5 exonuclease, putative OS=Ricinus communis GN=RCOM_1434540 PE=4 SV=1
Gene Ontology
ID GO:0003676
description polynucleotidyl transferase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59083: 131720-139024 , PASA_asmbl_59084: 134366-138580
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000808_130 0.0 - - 3-5 exonuclease, putative [Ricinus communis]
2 Hb_005000_110 0.0728672027 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
3 Hb_003120_020 0.0766164147 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 13-like [Prunus mume]
4 Hb_001343_030 0.0798425285 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
5 Hb_017434_040 0.0851778031 - - PREDICTED: uncharacterized oxidoreductase At4g09670-like [Jatropha curcas]
6 Hb_023344_090 0.0863527149 - - Photosystem II reaction center W protein, putative [Ricinus communis]
7 Hb_007597_030 0.0926659692 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000049_100 0.0994055858 - - Photosystem II reaction center W protein, putative [Ricinus communis]
9 Hb_000128_040 0.0996706914 - - PREDICTED: uncharacterized protein LOC105641228 isoform X1 [Jatropha curcas]
10 Hb_008195_070 0.1004754229 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_000511_030 0.101286732 - - PREDICTED: uncharacterized protein LOC105636463 [Jatropha curcas]
12 Hb_000116_320 0.1050237898 - - protein phosphatase 2c, putative [Ricinus communis]
13 Hb_003371_080 0.1065445362 - - hypothetical protein POPTR_0001s23660g [Populus trichocarpa]
14 Hb_002272_210 0.1066963609 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
15 Hb_001005_140 0.1073007454 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001675_090 0.1073143273 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
17 Hb_000719_030 0.1073655576 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
18 Hb_000962_090 0.1082355325 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
19 Hb_006198_030 0.1091550726 - - conserved hypothetical protein [Ricinus communis]
20 Hb_146225_020 0.10915723 - - chlorophyll A/B binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000808_130 Hb_000808_130 Hb_005000_110 Hb_005000_110 Hb_000808_130--Hb_005000_110 Hb_003120_020 Hb_003120_020 Hb_000808_130--Hb_003120_020 Hb_001343_030 Hb_001343_030 Hb_000808_130--Hb_001343_030 Hb_017434_040 Hb_017434_040 Hb_000808_130--Hb_017434_040 Hb_023344_090 Hb_023344_090 Hb_000808_130--Hb_023344_090 Hb_007597_030 Hb_007597_030 Hb_000808_130--Hb_007597_030 Hb_005000_110--Hb_001343_030 Hb_005000_110--Hb_007597_030 Hb_000962_090 Hb_000962_090 Hb_005000_110--Hb_000962_090 Hb_005000_110--Hb_023344_090 Hb_001488_250 Hb_001488_250 Hb_005000_110--Hb_001488_250 Hb_000049_100 Hb_000049_100 Hb_003120_020--Hb_000049_100 Hb_000881_070 Hb_000881_070 Hb_003120_020--Hb_000881_070 Hb_010326_020 Hb_010326_020 Hb_003120_020--Hb_010326_020 Hb_001534_060 Hb_001534_060 Hb_003120_020--Hb_001534_060 Hb_002375_030 Hb_002375_030 Hb_003120_020--Hb_002375_030 Hb_001343_030--Hb_000962_090 Hb_001975_120 Hb_001975_120 Hb_001343_030--Hb_001975_120 Hb_002272_210 Hb_002272_210 Hb_001343_030--Hb_002272_210 Hb_000530_040 Hb_000530_040 Hb_001343_030--Hb_000530_040 Hb_005211_080 Hb_005211_080 Hb_001343_030--Hb_005211_080 Hb_000359_050 Hb_000359_050 Hb_001343_030--Hb_000359_050 Hb_000608_270 Hb_000608_270 Hb_017434_040--Hb_000608_270 Hb_143629_180 Hb_143629_180 Hb_017434_040--Hb_143629_180 Hb_001571_100 Hb_001571_100 Hb_017434_040--Hb_001571_100 Hb_002028_020 Hb_002028_020 Hb_017434_040--Hb_002028_020 Hb_041433_010 Hb_041433_010 Hb_017434_040--Hb_041433_010 Hb_023344_090--Hb_001488_250 Hb_000128_040 Hb_000128_040 Hb_023344_090--Hb_000128_040 Hb_023344_090--Hb_001343_030 Hb_000116_320 Hb_000116_320 Hb_023344_090--Hb_000116_320 Hb_007597_030--Hb_002272_210 Hb_007597_030--Hb_001343_030 Hb_000460_040 Hb_000460_040 Hb_007597_030--Hb_000460_040 Hb_003623_080 Hb_003623_080 Hb_007597_030--Hb_003623_080 Hb_007597_030--Hb_005211_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.23803 6.52672 2.42173 0.00905648 0.0346749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.197848 0.0518913 0.0656428 0.15136 6.98682

CAGE analysis