Hb_000808_150

Information

Type -
Description -
Location Contig808: 161292-166350
Sequence    

Annotation

kegg
ID rcu:RCOM_1434570
description hypothetical protein
nr
ID XP_012088923.1
description PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTT2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23243 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59087: 161278-162424 , PASA_asmbl_59088: 161098-162709 , PASA_asmbl_59089: 162781-163481 , PASA_asmbl_59090: 163551-166165
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000808_150 0.0 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
2 Hb_000077_310 0.0683263439 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
3 Hb_000139_300 0.0951121143 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
4 Hb_000749_020 0.0995873312 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
5 Hb_001369_010 0.1024980559 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
6 Hb_000327_360 0.1102601442 - - unnamed protein product [Coffea canephora]
7 Hb_161396_010 0.1110409578 - - hypothetical protein F383_26394 [Gossypium arboreum]
8 Hb_000086_210 0.1131362064 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_003226_250 0.1134286487 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
10 Hb_000193_340 0.1165128742 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
11 Hb_001369_630 0.1177929185 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
12 Hb_005074_040 0.117845169 - - ATP binding protein, putative [Ricinus communis]
13 Hb_000649_040 0.1180488055 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
14 Hb_000417_380 0.1214477668 - - SecY protein transport family protein [Theobroma cacao]
15 Hb_007101_260 0.1247304516 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
16 Hb_000107_350 0.1254619212 - - PREDICTED: uncharacterized protein LOC105635576 [Jatropha curcas]
17 Hb_000049_160 0.1255271264 - - tyrosine decarboxylase family protein [Populus trichocarpa]
18 Hb_001195_660 0.1278698761 - - metalloendopeptidase, putative [Ricinus communis]
19 Hb_000935_040 0.1290423311 - - Uncharacterized protein isoform 2 [Theobroma cacao]
20 Hb_002759_220 0.1305656202 - - altered response to gravity (arg1), plant, putative [Ricinus communis]

Gene co-expression network

sample Hb_000808_150 Hb_000808_150 Hb_000077_310 Hb_000077_310 Hb_000808_150--Hb_000077_310 Hb_000139_300 Hb_000139_300 Hb_000808_150--Hb_000139_300 Hb_000749_020 Hb_000749_020 Hb_000808_150--Hb_000749_020 Hb_001369_010 Hb_001369_010 Hb_000808_150--Hb_001369_010 Hb_000327_360 Hb_000327_360 Hb_000808_150--Hb_000327_360 Hb_161396_010 Hb_161396_010 Hb_000808_150--Hb_161396_010 Hb_000417_380 Hb_000417_380 Hb_000077_310--Hb_000417_380 Hb_000077_310--Hb_000139_300 Hb_000580_110 Hb_000580_110 Hb_000077_310--Hb_000580_110 Hb_000107_350 Hb_000107_350 Hb_000077_310--Hb_000107_350 Hb_003226_250 Hb_003226_250 Hb_000077_310--Hb_003226_250 Hb_000086_210 Hb_000086_210 Hb_000139_300--Hb_000086_210 Hb_026549_070 Hb_026549_070 Hb_000139_300--Hb_026549_070 Hb_005074_040 Hb_005074_040 Hb_000139_300--Hb_005074_040 Hb_004306_110 Hb_004306_110 Hb_000139_300--Hb_004306_110 Hb_009079_050 Hb_009079_050 Hb_000139_300--Hb_009079_050 Hb_002817_040 Hb_002817_040 Hb_000749_020--Hb_002817_040 Hb_000749_020--Hb_000086_210 Hb_002759_120 Hb_002759_120 Hb_000749_020--Hb_002759_120 Hb_000749_020--Hb_005074_040 Hb_007904_060 Hb_007904_060 Hb_000749_020--Hb_007904_060 Hb_003462_040 Hb_003462_040 Hb_001369_010--Hb_003462_040 Hb_001369_010--Hb_003226_250 Hb_001195_660 Hb_001195_660 Hb_001369_010--Hb_001195_660 Hb_006750_010 Hb_006750_010 Hb_001369_010--Hb_006750_010 Hb_001369_010--Hb_000749_020 Hb_012807_150 Hb_012807_150 Hb_000327_360--Hb_012807_150 Hb_007101_260 Hb_007101_260 Hb_000327_360--Hb_007101_260 Hb_000327_360--Hb_005074_040 Hb_006120_060 Hb_006120_060 Hb_000327_360--Hb_006120_060 Hb_000283_140 Hb_000283_140 Hb_000327_360--Hb_000283_140 Hb_000076_030 Hb_000076_030 Hb_161396_010--Hb_000076_030 Hb_161396_010--Hb_007101_260 Hb_000193_340 Hb_000193_340 Hb_161396_010--Hb_000193_340 Hb_048476_140 Hb_048476_140 Hb_161396_010--Hb_048476_140 Hb_002759_220 Hb_002759_220 Hb_161396_010--Hb_002759_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.526074 1.92321 6.38431 14.8551 0.724024 0.684075
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.5217 2.10751 1.69375 2.75064 10.1598

CAGE analysis