Hb_000808_160

Information

Type -
Description -
Location Contig808: 171514-172734
Sequence    

Annotation

kegg
ID pop:POPTR_0013s01170g
description POPTRDRAFT_570730; hypothetical protein
nr
ID XP_012088922.1
description PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JV36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23242 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59091: 171855-173010
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000808_160 0.0 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
2 Hb_002571_010 0.0763959286 - - cationic amino acid transporter, putative [Ricinus communis]
3 Hb_017604_020 0.1016788124 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
4 Hb_000522_130 0.1095219536 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
5 Hb_000094_010 0.1108356198 - - lrr receptor protein kinase, putative [Ricinus communis]
6 Hb_000976_340 0.1179766977 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_001699_050 0.1238487424 transcription factor TF Family: MYB hypothetical protein POPTR_0005s11410g [Populus trichocarpa]
8 Hb_000061_100 0.1256635398 - - hypothetical protein CISIN_1g0053742mg, partial [Citrus sinensis]
9 Hb_000995_010 0.1314514377 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
10 Hb_006198_060 0.1315914434 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
11 Hb_073119_010 0.1331122106 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
12 Hb_002329_030 0.1338769681 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
13 Hb_004166_010 0.1369558705 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
14 Hb_000172_080 0.1371363594 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
15 Hb_000116_290 0.1379943823 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
16 Hb_009247_030 0.1386727336 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
17 Hb_000819_010 0.1397589163 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
18 Hb_064047_010 0.1406984236 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008040_060 0.1439906424 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
20 Hb_002324_050 0.1450301695 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]

Gene co-expression network

sample Hb_000808_160 Hb_000808_160 Hb_002571_010 Hb_002571_010 Hb_000808_160--Hb_002571_010 Hb_017604_020 Hb_017604_020 Hb_000808_160--Hb_017604_020 Hb_000522_130 Hb_000522_130 Hb_000808_160--Hb_000522_130 Hb_000094_010 Hb_000094_010 Hb_000808_160--Hb_000094_010 Hb_000976_340 Hb_000976_340 Hb_000808_160--Hb_000976_340 Hb_001699_050 Hb_001699_050 Hb_000808_160--Hb_001699_050 Hb_009247_030 Hb_009247_030 Hb_002571_010--Hb_009247_030 Hb_001879_050 Hb_001879_050 Hb_002571_010--Hb_001879_050 Hb_000172_080 Hb_000172_080 Hb_002571_010--Hb_000172_080 Hb_001754_200 Hb_001754_200 Hb_002571_010--Hb_001754_200 Hb_004166_010 Hb_004166_010 Hb_002571_010--Hb_004166_010 Hb_017604_020--Hb_001699_050 Hb_002276_100 Hb_002276_100 Hb_017604_020--Hb_002276_100 Hb_003556_070 Hb_003556_070 Hb_017604_020--Hb_003556_070 Hb_004544_090 Hb_004544_090 Hb_017604_020--Hb_004544_090 Hb_009510_050 Hb_009510_050 Hb_017604_020--Hb_009510_050 Hb_033312_090 Hb_033312_090 Hb_000522_130--Hb_033312_090 Hb_012098_180 Hb_012098_180 Hb_000522_130--Hb_012098_180 Hb_001538_050 Hb_001538_050 Hb_000522_130--Hb_001538_050 Hb_003914_050 Hb_003914_050 Hb_000522_130--Hb_003914_050 Hb_008040_060 Hb_008040_060 Hb_000522_130--Hb_008040_060 Hb_000705_130 Hb_000705_130 Hb_000522_130--Hb_000705_130 Hb_002529_080 Hb_002529_080 Hb_000094_010--Hb_002529_080 Hb_000094_010--Hb_003914_050 Hb_000116_290 Hb_000116_290 Hb_000094_010--Hb_000116_290 Hb_000094_010--Hb_008040_060 Hb_000094_010--Hb_000976_340 Hb_000094_010--Hb_000522_130 Hb_000976_340--Hb_000116_290 Hb_001248_170 Hb_001248_170 Hb_000976_340--Hb_001248_170 Hb_005784_020 Hb_005784_020 Hb_000976_340--Hb_005784_020 Hb_000976_340--Hb_008040_060 Hb_002329_030 Hb_002329_030 Hb_000976_340--Hb_002329_030 Hb_004032_250 Hb_004032_250 Hb_001699_050--Hb_004032_250 Hb_000007_160 Hb_000007_160 Hb_001699_050--Hb_000007_160 Hb_001699_050--Hb_009510_050 Hb_002324_050 Hb_002324_050 Hb_001699_050--Hb_002324_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.83309 66.4332 11.7754 25.0571 0.412168 1.89639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.19215 0.500148 0.174605 17.5254 14.6993

CAGE analysis