Hb_000808_190

Information

Type -
Description -
Location Contig808: 189818-192137
Sequence    

Annotation

kegg
ID egr:104456708
description GTP-binding protein SAR1A-like
nr
ID XP_010069865.1
description PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
swissprot
ID O04834
description GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1
trembl
ID A0A059AXI2
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01051 PE=3 SV=1
Gene Ontology
ID GO:0005783
description gtp-binding protein sar1a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59096: 189880-192078 , PASA_asmbl_59097: 190401-190934
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000808_190 0.0 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
2 Hb_006573_020 0.0664393405 - - PREDICTED: 40S ribosomal protein S10-like [Jatropha curcas]
3 Hb_001353_010 0.071510086 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
4 Hb_000028_350 0.07509875 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
5 Hb_002000_140 0.0798616664 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
6 Hb_005307_050 0.0809698 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
7 Hb_002303_060 0.0860471802 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000701_100 0.0871611237 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
9 Hb_000045_310 0.0911247865 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
10 Hb_007928_030 0.0911408485 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
11 Hb_000431_070 0.0912296928 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
12 Hb_186982_040 0.0915929127 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
13 Hb_005269_080 0.0917147696 - - protein with unknown function [Ricinus communis]
14 Hb_045003_010 0.0921856216 - - Stomatin-1, putative [Ricinus communis]
15 Hb_000849_130 0.094474777 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
16 Hb_154948_040 0.0949320045 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
17 Hb_017491_060 0.095729405 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
18 Hb_003605_160 0.097723953 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
19 Hb_006915_040 0.0977334971 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
20 Hb_028396_010 0.0982432185 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]

Gene co-expression network

sample Hb_000808_190 Hb_000808_190 Hb_006573_020 Hb_006573_020 Hb_000808_190--Hb_006573_020 Hb_001353_010 Hb_001353_010 Hb_000808_190--Hb_001353_010 Hb_000028_350 Hb_000028_350 Hb_000808_190--Hb_000028_350 Hb_002000_140 Hb_002000_140 Hb_000808_190--Hb_002000_140 Hb_005307_050 Hb_005307_050 Hb_000808_190--Hb_005307_050 Hb_002303_060 Hb_002303_060 Hb_000808_190--Hb_002303_060 Hb_003494_050 Hb_003494_050 Hb_006573_020--Hb_003494_050 Hb_001057_040 Hb_001057_040 Hb_006573_020--Hb_001057_040 Hb_000002_380 Hb_000002_380 Hb_006573_020--Hb_000002_380 Hb_186982_040 Hb_186982_040 Hb_006573_020--Hb_186982_040 Hb_000005_090 Hb_000005_090 Hb_006573_020--Hb_000005_090 Hb_045003_010 Hb_045003_010 Hb_001353_010--Hb_045003_010 Hb_001489_110 Hb_001489_110 Hb_001353_010--Hb_001489_110 Hb_001353_010--Hb_002303_060 Hb_000563_200 Hb_000563_200 Hb_001353_010--Hb_000563_200 Hb_025098_010 Hb_025098_010 Hb_001353_010--Hb_025098_010 Hb_002111_040 Hb_002111_040 Hb_000028_350--Hb_002111_040 Hb_002284_230 Hb_002284_230 Hb_000028_350--Hb_002284_230 Hb_000363_360 Hb_000363_360 Hb_000028_350--Hb_000363_360 Hb_000028_350--Hb_000563_200 Hb_004672_010 Hb_004672_010 Hb_000028_350--Hb_004672_010 Hb_000189_240 Hb_000189_240 Hb_002000_140--Hb_000189_240 Hb_002000_140--Hb_002303_060 Hb_000431_070 Hb_000431_070 Hb_002000_140--Hb_000431_070 Hb_001512_080 Hb_001512_080 Hb_002000_140--Hb_001512_080 Hb_001329_150 Hb_001329_150 Hb_002000_140--Hb_001329_150 Hb_005269_080 Hb_005269_080 Hb_002000_140--Hb_005269_080 Hb_007928_030 Hb_007928_030 Hb_005307_050--Hb_007928_030 Hb_005307_050--Hb_186982_040 Hb_000212_290 Hb_000212_290 Hb_005307_050--Hb_000212_290 Hb_008695_050 Hb_008695_050 Hb_005307_050--Hb_008695_050 Hb_001242_140 Hb_001242_140 Hb_005307_050--Hb_001242_140 Hb_002303_060--Hb_005269_080 Hb_001053_140 Hb_001053_140 Hb_002303_060--Hb_001053_140 Hb_002303_060--Hb_000189_240 Hb_002314_010 Hb_002314_010 Hb_002303_060--Hb_002314_010 Hb_003605_160 Hb_003605_160 Hb_002303_060--Hb_003605_160 Hb_000107_300 Hb_000107_300 Hb_002303_060--Hb_000107_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.9173 16.664 37.6848 83.5698 25.7026 54.6492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.8564 113.375 55.6154 48.5535 41.4011

CAGE analysis