Hb_000808_230

Information

Type -
Description -
Location Contig808: 239752-253052
Sequence    

Annotation

kegg
ID rcu:RCOM_1434900
description peptide chain release factor, putative
nr
ID XP_012088876.1
description PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
swissprot
ID F4I532
description Peptide chain release factor PrfB2, chloroplastic OS=Arabidopsis thaliana GN=PRFB2 PE=3 SV=1
trembl
ID A0A067JV08
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23212 PE=4 SV=1
Gene Ontology
ID GO:0016149
description peptide chain release factor chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59101: 239542-239650 , PASA_asmbl_59102: 239682-239905 , PASA_asmbl_59103: 240207-240655 , PASA_asmbl_59104: 242269-242774 , PASA_asmbl_59107: 249774-250222 , PASA_asmbl_59108: 250282-251658 , PASA_asmbl_59109: 251740-252287 , PASA_asmbl_59110: 252392-252902
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000808_230 0.0 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
2 Hb_006400_060 0.0598907033 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1 [Jatropha curcas]
3 Hb_007426_030 0.0607244254 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]
4 Hb_000796_220 0.0630712408 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
5 Hb_044728_010 0.0697889141 - - -
6 Hb_001545_120 0.0713754403 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
7 Hb_000170_210 0.071522233 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_001269_550 0.0727179856 - - hypothetical protein POPTR_0001s03510g [Populus trichocarpa]
9 Hb_004109_090 0.0736538599 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_000483_200 0.073976107 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
11 Hb_018838_030 0.0743459957 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002496_030 0.0746643973 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
13 Hb_002876_110 0.0752882243 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000030_300 0.0772695201 - - Thioredoxin, putative [Ricinus communis]
15 Hb_002079_010 0.0790890713 - - hypothetical protein POPTR_0001s01970g [Populus trichocarpa]
16 Hb_002016_110 0.0792414214 - - transducin family protein [Populus trichocarpa]
17 Hb_000107_620 0.080015797 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
18 Hb_001675_180 0.0801522747 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
19 Hb_002044_080 0.0806312214 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
20 Hb_004724_200 0.0818552796 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]

Gene co-expression network

sample Hb_000808_230 Hb_000808_230 Hb_006400_060 Hb_006400_060 Hb_000808_230--Hb_006400_060 Hb_007426_030 Hb_007426_030 Hb_000808_230--Hb_007426_030 Hb_000796_220 Hb_000796_220 Hb_000808_230--Hb_000796_220 Hb_044728_010 Hb_044728_010 Hb_000808_230--Hb_044728_010 Hb_001545_120 Hb_001545_120 Hb_000808_230--Hb_001545_120 Hb_000170_210 Hb_000170_210 Hb_000808_230--Hb_000170_210 Hb_000483_200 Hb_000483_200 Hb_006400_060--Hb_000483_200 Hb_003032_040 Hb_003032_040 Hb_006400_060--Hb_003032_040 Hb_002079_010 Hb_002079_010 Hb_006400_060--Hb_002079_010 Hb_002016_110 Hb_002016_110 Hb_006400_060--Hb_002016_110 Hb_006400_030 Hb_006400_030 Hb_006400_060--Hb_006400_030 Hb_000103_180 Hb_000103_180 Hb_007426_030--Hb_000103_180 Hb_001019_060 Hb_001019_060 Hb_007426_030--Hb_001019_060 Hb_007426_030--Hb_000483_200 Hb_007426_030--Hb_002079_010 Hb_007426_030--Hb_006400_060 Hb_004109_090 Hb_004109_090 Hb_000796_220--Hb_004109_090 Hb_000796_220--Hb_000170_210 Hb_001675_180 Hb_001675_180 Hb_000796_220--Hb_001675_180 Hb_085781_010 Hb_085781_010 Hb_000796_220--Hb_085781_010 Hb_000832_020 Hb_000832_020 Hb_000796_220--Hb_000832_020 Hb_009767_110 Hb_009767_110 Hb_044728_010--Hb_009767_110 Hb_000107_330 Hb_000107_330 Hb_044728_010--Hb_000107_330 Hb_000092_170 Hb_000092_170 Hb_044728_010--Hb_000092_170 Hb_000225_040 Hb_000225_040 Hb_044728_010--Hb_000225_040 Hb_044728_010--Hb_001675_180 Hb_010618_010 Hb_010618_010 Hb_044728_010--Hb_010618_010 Hb_002044_080 Hb_002044_080 Hb_001545_120--Hb_002044_080 Hb_011673_030 Hb_011673_030 Hb_001545_120--Hb_011673_030 Hb_006502_090 Hb_006502_090 Hb_001545_120--Hb_006502_090 Hb_001776_140 Hb_001776_140 Hb_001545_120--Hb_001776_140 Hb_004600_040 Hb_004600_040 Hb_001545_120--Hb_004600_040 Hb_003175_010 Hb_003175_010 Hb_000170_210--Hb_003175_010 Hb_000170_210--Hb_002044_080 Hb_000395_170 Hb_000395_170 Hb_000170_210--Hb_000395_170 Hb_000926_280 Hb_000926_280 Hb_000170_210--Hb_000926_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.87581 1.91441 1.64069 1.34897 3.76617 5.3396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.25224 4.08139 4.68443 3.20799 2.67521

CAGE analysis