Hb_000808_240

Information

Type -
Description -
Location Contig808: 249202-249552
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000808_240 0.0 - - -
2 Hb_000248_010 0.1539712765 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
3 Hb_000200_040 0.1606907293 - - -
4 Hb_002960_050 0.1791096349 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
5 Hb_005965_010 0.1842557022 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
6 Hb_088065_010 0.1845375387 - - hypothetical protein glysoja_007934 [Glycine soja]
7 Hb_139859_010 0.1987299382 - - PREDICTED: cell division control protein 48 homolog D-like [Nicotiana sylvestris]
8 Hb_134310_020 0.2137559959 - - PREDICTED: putative cytochrome c oxidase subunit 5C-4-like [Citrus sinensis]
9 Hb_006455_110 0.2147137406 - - bromodomain-containing protein, putative [Ricinus communis]
10 Hb_073559_010 0.2156249122 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
11 Hb_000976_030 0.2165107441 - - PREDICTED: molybdenum cofactor sulfurase-like [Citrus sinensis]
12 Hb_171788_010 0.2174968605 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]
13 Hb_006723_020 0.219206039 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
14 Hb_075964_010 0.2204645124 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
15 Hb_000295_100 0.2208663167 - - -
16 Hb_001722_020 0.2236092431 - - -
17 Hb_003581_010 0.2237812786 - - hypothetical protein VITISV_004687 [Vitis vinifera]
18 Hb_000295_090 0.2251430995 - - Clathrin light chain 2 [Glycine soja]
19 Hb_000270_500 0.228601985 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
20 Hb_005933_010 0.2317797002 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]

Gene co-expression network

sample Hb_000808_240 Hb_000808_240 Hb_000248_010 Hb_000248_010 Hb_000808_240--Hb_000248_010 Hb_000200_040 Hb_000200_040 Hb_000808_240--Hb_000200_040 Hb_002960_050 Hb_002960_050 Hb_000808_240--Hb_002960_050 Hb_005965_010 Hb_005965_010 Hb_000808_240--Hb_005965_010 Hb_088065_010 Hb_088065_010 Hb_000808_240--Hb_088065_010 Hb_139859_010 Hb_139859_010 Hb_000808_240--Hb_139859_010 Hb_000248_010--Hb_002960_050 Hb_000248_030 Hb_000248_030 Hb_000248_010--Hb_000248_030 Hb_073559_010 Hb_073559_010 Hb_000248_010--Hb_073559_010 Hb_001235_060 Hb_001235_060 Hb_000248_010--Hb_001235_060 Hb_000248_010--Hb_088065_010 Hb_005933_010 Hb_005933_010 Hb_000248_010--Hb_005933_010 Hb_012807_080 Hb_012807_080 Hb_000200_040--Hb_012807_080 Hb_006455_110 Hb_006455_110 Hb_000200_040--Hb_006455_110 Hb_000200_040--Hb_005965_010 Hb_006455_080 Hb_006455_080 Hb_000200_040--Hb_006455_080 Hb_000200_040--Hb_139859_010 Hb_176117_010 Hb_176117_010 Hb_000200_040--Hb_176117_010 Hb_000295_100 Hb_000295_100 Hb_002960_050--Hb_000295_100 Hb_002783_060 Hb_002783_060 Hb_002960_050--Hb_002783_060 Hb_002960_050--Hb_005965_010 Hb_002960_050--Hb_073559_010 Hb_106005_010 Hb_106005_010 Hb_002960_050--Hb_106005_010 Hb_005965_010--Hb_006455_110 Hb_073339_010 Hb_073339_010 Hb_005965_010--Hb_073339_010 Hb_005965_010--Hb_106005_010 Hb_005965_010--Hb_012807_080 Hb_005965_010--Hb_006455_080 Hb_006455_090 Hb_006455_090 Hb_005965_010--Hb_006455_090 Hb_000523_100 Hb_000523_100 Hb_088065_010--Hb_000523_100 Hb_088065_010--Hb_073559_010 Hb_088774_010 Hb_088774_010 Hb_088065_010--Hb_088774_010 Hb_088065_010--Hb_005965_010 Hb_032225_020 Hb_032225_020 Hb_088065_010--Hb_032225_020 Hb_171788_010 Hb_171788_010 Hb_139859_010--Hb_171788_010 Hb_003299_090 Hb_003299_090 Hb_139859_010--Hb_003299_090 Hb_005914_090 Hb_005914_090 Hb_139859_010--Hb_005914_090 Hb_000453_080 Hb_000453_080 Hb_139859_010--Hb_000453_080 Hb_000270_020 Hb_000270_020 Hb_139859_010--Hb_000270_020 Hb_139859_010--Hb_006455_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.30878 3.97381 0.364451 2.31447 2.69174 34.3748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.33831 3.47112 2.80854 4.34224 0

CAGE analysis