Hb_000808_260

Information

Type -
Description -
Location Contig808: 257275-259971
Sequence    

Annotation

kegg
ID rcu:RCOM_1434920
description hypothetical protein
nr
ID XP_002512506.1
description hypothetical protein RCOM_1434920 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RFI7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1434920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59114: 257533-258053
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000808_260 0.0 - - hypothetical protein RCOM_1434920 [Ricinus communis]
2 Hb_004976_080 0.1319880564 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
3 Hb_019837_010 0.1321760818 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000594_150 0.1342358742 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X1 [Nelumbo nucifera]
5 Hb_004907_070 0.1567278174 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
6 Hb_000072_240 0.1585357653 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
7 Hb_003126_010 0.1603071543 - - PREDICTED: oligopeptide transporter 7-like isoform X1 [Malus domestica]
8 Hb_002835_280 0.1619622144 - - PREDICTED: L-type lectin-domain containing receptor kinase S.1 [Jatropha curcas]
9 Hb_002999_140 0.1621329058 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
10 Hb_000203_210 0.1652486645 - - PREDICTED: uncharacterized protein LOC105040619 isoform X3 [Elaeis guineensis]
11 Hb_074109_010 0.165645651 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
12 Hb_001619_090 0.1672083232 - - heat shock protein binding protein, putative [Ricinus communis]
13 Hb_000453_280 0.1686712205 - - negative cofactor 2 transcriptional co-repressor, putative [Ricinus communis]
14 Hb_001556_020 0.1727291305 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
15 Hb_119327_010 0.1736624759 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
16 Hb_002010_050 0.1737735677 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000365_220 0.1761690962 - - protein phosphatase-1, putative [Ricinus communis]
18 Hb_008494_090 0.1764051247 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
19 Hb_003786_010 0.1788945085 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
20 Hb_000035_060 0.1802163711 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000808_260 Hb_000808_260 Hb_004976_080 Hb_004976_080 Hb_000808_260--Hb_004976_080 Hb_019837_010 Hb_019837_010 Hb_000808_260--Hb_019837_010 Hb_000594_150 Hb_000594_150 Hb_000808_260--Hb_000594_150 Hb_004907_070 Hb_004907_070 Hb_000808_260--Hb_004907_070 Hb_000072_240 Hb_000072_240 Hb_000808_260--Hb_000072_240 Hb_003126_010 Hb_003126_010 Hb_000808_260--Hb_003126_010 Hb_004976_080--Hb_019837_010 Hb_004976_080--Hb_000594_150 Hb_004976_080--Hb_000072_240 Hb_004976_080--Hb_004907_070 Hb_000035_060 Hb_000035_060 Hb_004976_080--Hb_000035_060 Hb_004525_020 Hb_004525_020 Hb_004976_080--Hb_004525_020 Hb_019837_010--Hb_000594_150 Hb_019837_010--Hb_004907_070 Hb_019837_010--Hb_000072_240 Hb_002999_130 Hb_002999_130 Hb_019837_010--Hb_002999_130 Hb_000594_150--Hb_000072_240 Hb_000594_150--Hb_002999_130 Hb_000594_150--Hb_004907_070 Hb_010180_050 Hb_010180_050 Hb_000594_150--Hb_010180_050 Hb_001951_230 Hb_001951_230 Hb_004907_070--Hb_001951_230 Hb_001357_060 Hb_001357_060 Hb_004907_070--Hb_001357_060 Hb_002809_120 Hb_002809_120 Hb_004907_070--Hb_002809_120 Hb_019863_050 Hb_019863_050 Hb_000072_240--Hb_019863_050 Hb_000072_240--Hb_010180_050 Hb_000072_240--Hb_003126_010 Hb_002211_020 Hb_002211_020 Hb_000072_240--Hb_002211_020 Hb_000049_290 Hb_000049_290 Hb_003126_010--Hb_000049_290 Hb_022487_010 Hb_022487_010 Hb_003126_010--Hb_022487_010 Hb_000331_220 Hb_000331_220 Hb_003126_010--Hb_000331_220 Hb_000363_050 Hb_000363_050 Hb_003126_010--Hb_000363_050 Hb_003126_010--Hb_000594_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0372938 0.607241 0.377767 0.246003 0.0116406 0.0108936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0565941 0.0890522 0 0.159778 0.74776

CAGE analysis