Hb_000808_270

Information

Type -
Description -
Location Contig808: 269208-280028
Sequence    

Annotation

kegg
ID pop:POPTR_0013s01030g
description POPTRDRAFT_894071; Lon protease 2 family protein
nr
ID XP_012088878.1
description PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
swissprot
ID P93655
description Lon protease homolog 1, mitochondrial OS=Arabidopsis thaliana GN=LON1 PE=1 SV=2
trembl
ID A0A067JKP3
description Lon protease homolog, mitochondrial OS=Jatropha curcas GN=JCGZ_23216 PE=3 SV=1
Gene Ontology
ID GO:0005759
description lon protease homolog mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59115: 269244-270496 , PASA_asmbl_59116: 270511-274677 , PASA_asmbl_59117: 274730-279116
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000808_270 0.0 - - PREDICTED: lon protease homolog 1, mitochondrial [Jatropha curcas]
2 Hb_006827_020 0.0475090266 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003175_010 0.0478062455 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
4 Hb_001677_210 0.0511169792 - - hypothetical protein JCGZ_01374 [Jatropha curcas]
5 Hb_007317_110 0.0543114051 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
6 Hb_143629_210 0.0560004129 - - PREDICTED: transcription factor PIF3 isoform X1 [Jatropha curcas]
7 Hb_000629_010 0.0568372053 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
8 Hb_000030_300 0.0588308087 - - Thioredoxin, putative [Ricinus communis]
9 Hb_003766_040 0.0592798338 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_001489_150 0.062931168 - - PREDICTED: uncharacterized protein LOC105123623 isoform X2 [Populus euphratica]
11 Hb_000011_200 0.0647285903 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
12 Hb_000926_280 0.0649581931 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
13 Hb_007416_280 0.0670954553 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001493_030 0.068374365 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
15 Hb_048937_040 0.0687632198 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
16 Hb_010457_030 0.0709758285 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
17 Hb_019280_040 0.0715702075 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_001143_160 0.0717710119 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
19 Hb_000085_160 0.0729842195 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
20 Hb_004032_150 0.0740841588 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]

Gene co-expression network

sample Hb_000808_270 Hb_000808_270 Hb_006827_020 Hb_006827_020 Hb_000808_270--Hb_006827_020 Hb_003175_010 Hb_003175_010 Hb_000808_270--Hb_003175_010 Hb_001677_210 Hb_001677_210 Hb_000808_270--Hb_001677_210 Hb_007317_110 Hb_007317_110 Hb_000808_270--Hb_007317_110 Hb_143629_210 Hb_143629_210 Hb_000808_270--Hb_143629_210 Hb_000629_010 Hb_000629_010 Hb_000808_270--Hb_000629_010 Hb_006827_020--Hb_007317_110 Hb_007059_010 Hb_007059_010 Hb_006827_020--Hb_007059_010 Hb_000538_100 Hb_000538_100 Hb_006827_020--Hb_000538_100 Hb_000011_200 Hb_000011_200 Hb_006827_020--Hb_000011_200 Hb_003813_130 Hb_003813_130 Hb_006827_020--Hb_003813_130 Hb_000926_280 Hb_000926_280 Hb_003175_010--Hb_000926_280 Hb_019280_040 Hb_019280_040 Hb_003175_010--Hb_019280_040 Hb_000030_300 Hb_000030_300 Hb_003175_010--Hb_000030_300 Hb_003766_040 Hb_003766_040 Hb_003175_010--Hb_003766_040 Hb_048937_040 Hb_048937_040 Hb_003175_010--Hb_048937_040 Hb_001677_210--Hb_003766_040 Hb_001677_210--Hb_000629_010 Hb_006185_050 Hb_006185_050 Hb_001677_210--Hb_006185_050 Hb_008803_090 Hb_008803_090 Hb_001677_210--Hb_008803_090 Hb_001677_210--Hb_000926_280 Hb_000085_160 Hb_000085_160 Hb_007317_110--Hb_000085_160 Hb_003665_060 Hb_003665_060 Hb_007317_110--Hb_003665_060 Hb_003964_070 Hb_003964_070 Hb_007317_110--Hb_003964_070 Hb_007317_110--Hb_007059_010 Hb_003464_050 Hb_003464_050 Hb_143629_210--Hb_003464_050 Hb_004032_150 Hb_004032_150 Hb_143629_210--Hb_004032_150 Hb_000618_040 Hb_000618_040 Hb_143629_210--Hb_000618_040 Hb_000010_330 Hb_000010_330 Hb_143629_210--Hb_000010_330 Hb_000451_010 Hb_000451_010 Hb_143629_210--Hb_000451_010 Hb_000629_010--Hb_000030_300 Hb_002603_120 Hb_002603_120 Hb_000629_010--Hb_002603_120 Hb_004355_020 Hb_004355_020 Hb_000629_010--Hb_004355_020 Hb_011218_040 Hb_011218_040 Hb_000629_010--Hb_011218_040 Hb_039946_020 Hb_039946_020 Hb_000629_010--Hb_039946_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1672 7.99767 7.60719 7.33648 12.9229 17.3866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.0825 10.9066 13.0775 10.2095 4.42093

CAGE analysis