Hb_000809_060

Information

Type transcription factor
Description TF Family: LOB
Location Contig809: 62647-63576
Sequence    

Annotation

kegg
ID pop:POPTR_0007s11460g
description POPTRDRAFT_1083254; hypothetical protein
nr
ID KHG26276.1
description LOB domain-containing 36 -like protein [Gossypium arboreum]
swissprot
ID Q9FKZ3
description LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1
trembl
ID A0A0B0PS92
description LOB domain-containing 36-like protein OS=Gossypium arboreum GN=F383_00956 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000809_060 0.0 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
2 Hb_002081_030 0.0968975829 - - unnamed protein product [Coffea canephora]
3 Hb_009778_040 0.112837702 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
4 Hb_007885_010 0.1174885516 - - 60S ribosomal protein L24-1 isoform 1 [Theobroma cacao]
5 Hb_004755_030 0.1218385969 - - EG964 [Manihot glaziovii]
6 Hb_005144_070 0.1232671126 - - conserved hypothetical protein [Ricinus communis]
7 Hb_076693_040 0.1233817304 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
8 Hb_000340_500 0.1312731826 - - PREDICTED: aldo-keto reductase-like [Jatropha curcas]
9 Hb_000384_130 0.1313647672 - - uridylate kinase plant, putative [Ricinus communis]
10 Hb_000948_220 0.1380216869 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
11 Hb_000317_070 0.140462431 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
12 Hb_001304_140 0.1436008031 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
13 Hb_000789_110 0.1440899924 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
14 Hb_000087_130 0.1449825081 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
15 Hb_001105_090 0.1460135514 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
16 Hb_027472_160 0.1461306494 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
17 Hb_000270_720 0.1481744523 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
18 Hb_000062_390 0.1494692483 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
19 Hb_001604_030 0.1503720314 - - ubiquitin-conjugating enzyme E2 35-like [Cucumis sativus]
20 Hb_001155_040 0.1513773839 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]

Gene co-expression network

sample Hb_000809_060 Hb_000809_060 Hb_002081_030 Hb_002081_030 Hb_000809_060--Hb_002081_030 Hb_009778_040 Hb_009778_040 Hb_000809_060--Hb_009778_040 Hb_007885_010 Hb_007885_010 Hb_000809_060--Hb_007885_010 Hb_004755_030 Hb_004755_030 Hb_000809_060--Hb_004755_030 Hb_005144_070 Hb_005144_070 Hb_000809_060--Hb_005144_070 Hb_076693_040 Hb_076693_040 Hb_000809_060--Hb_076693_040 Hb_000087_130 Hb_000087_130 Hb_002081_030--Hb_000087_130 Hb_001726_040 Hb_001726_040 Hb_002081_030--Hb_001726_040 Hb_000948_220 Hb_000948_220 Hb_002081_030--Hb_000948_220 Hb_027472_160 Hb_027472_160 Hb_002081_030--Hb_027472_160 Hb_002081_030--Hb_009778_040 Hb_002838_030 Hb_002838_030 Hb_009778_040--Hb_002838_030 Hb_001105_090 Hb_001105_090 Hb_009778_040--Hb_001105_090 Hb_003020_330 Hb_003020_330 Hb_009778_040--Hb_003020_330 Hb_006588_080 Hb_006588_080 Hb_009778_040--Hb_006588_080 Hb_120823_010 Hb_120823_010 Hb_009778_040--Hb_120823_010 Hb_001754_140 Hb_001754_140 Hb_007885_010--Hb_001754_140 Hb_000159_070 Hb_000159_070 Hb_007885_010--Hb_000159_070 Hb_001512_050 Hb_001512_050 Hb_007885_010--Hb_001512_050 Hb_003058_080 Hb_003058_080 Hb_007885_010--Hb_003058_080 Hb_000212_210 Hb_000212_210 Hb_007885_010--Hb_000212_210 Hb_000270_720 Hb_000270_720 Hb_004755_030--Hb_000270_720 Hb_000789_110 Hb_000789_110 Hb_004755_030--Hb_000789_110 Hb_008887_040 Hb_008887_040 Hb_004755_030--Hb_008887_040 Hb_004007_180 Hb_004007_180 Hb_004755_030--Hb_004007_180 Hb_002316_120 Hb_002316_120 Hb_004755_030--Hb_002316_120 Hb_000975_180 Hb_000975_180 Hb_004755_030--Hb_000975_180 Hb_007313_080 Hb_007313_080 Hb_005144_070--Hb_007313_080 Hb_000768_130 Hb_000768_130 Hb_005144_070--Hb_000768_130 Hb_005144_070--Hb_002081_030 Hb_000454_180 Hb_000454_180 Hb_005144_070--Hb_000454_180 Hb_000742_280 Hb_000742_280 Hb_005144_070--Hb_000742_280 Hb_001304_140 Hb_001304_140 Hb_076693_040--Hb_001304_140 Hb_076693_040--Hb_000159_070 Hb_002391_220 Hb_002391_220 Hb_076693_040--Hb_002391_220 Hb_009384_020 Hb_009384_020 Hb_076693_040--Hb_009384_020 Hb_000172_420 Hb_000172_420 Hb_076693_040--Hb_000172_420 Hb_076693_040--Hb_000270_720
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15647 0.477576 2.32245 2.22576 0.463476 0.609906
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.94023 7.90247 2.31879 0.75639 0.532972

CAGE analysis