Hb_000809_080

Information

Type -
Description -
Location Contig809: 85097-87359
Sequence    

Annotation

kegg
ID rcu:RCOM_0602110
description 50S ribosomal protein L25, putative
nr
ID XP_002522324.1
description 50S ribosomal protein L25, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S8K5
description 50S ribosomal protein L25, putative OS=Ricinus communis GN=RCOM_0602110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59141: 85101-85396
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000809_080 0.0 - - 50S ribosomal protein L25, putative [Ricinus communis]
2 Hb_001472_130 0.1372781672 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
3 Hb_000221_060 0.1461569795 - - -
4 Hb_002918_150 0.1557500629 transcription factor TF Family: ERF ethylene-responsive element binding protein 1 [Hevea brasiliensis]
5 Hb_006935_010 0.1607651238 - - PREDICTED: inositol transporter 1 isoform X1 [Gossypium raimondii]
6 Hb_000803_060 0.1620187145 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
7 Hb_000103_400 0.1701789676 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
8 Hb_002686_400 0.1723410688 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
9 Hb_003494_060 0.1730194626 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
10 Hb_006414_020 0.1750472453 transcription factor TF Family: MYB -
11 Hb_000179_230 0.177215237 - - PREDICTED: myosin-17 [Jatropha curcas]
12 Hb_000805_230 0.1772402482 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
13 Hb_004466_070 0.178393506 - - hypothetical protein RCOM_1447500 [Ricinus communis]
14 Hb_001489_120 0.1824355499 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
15 Hb_000015_180 0.1830310191 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
16 Hb_001504_270 0.1843125143 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
17 Hb_012787_040 0.1865959538 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
18 Hb_103788_010 0.1883024614 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
19 Hb_000220_090 0.1901541618 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
20 Hb_008103_100 0.1907276621 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2 [Jatropha curcas]

Gene co-expression network

sample Hb_000809_080 Hb_000809_080 Hb_001472_130 Hb_001472_130 Hb_000809_080--Hb_001472_130 Hb_000221_060 Hb_000221_060 Hb_000809_080--Hb_000221_060 Hb_002918_150 Hb_002918_150 Hb_000809_080--Hb_002918_150 Hb_006935_010 Hb_006935_010 Hb_000809_080--Hb_006935_010 Hb_000803_060 Hb_000803_060 Hb_000809_080--Hb_000803_060 Hb_000103_400 Hb_000103_400 Hb_000809_080--Hb_000103_400 Hb_000038_040 Hb_000038_040 Hb_001472_130--Hb_000038_040 Hb_000805_230 Hb_000805_230 Hb_001472_130--Hb_000805_230 Hb_001472_130--Hb_006935_010 Hb_001472_130--Hb_000221_060 Hb_000417_420 Hb_000417_420 Hb_001472_130--Hb_000417_420 Hb_000221_060--Hb_000803_060 Hb_001489_120 Hb_001489_120 Hb_000221_060--Hb_001489_120 Hb_012787_040 Hb_012787_040 Hb_000221_060--Hb_012787_040 Hb_000071_140 Hb_000071_140 Hb_000221_060--Hb_000071_140 Hb_006414_020 Hb_006414_020 Hb_000221_060--Hb_006414_020 Hb_000221_060--Hb_000103_400 Hb_048653_020 Hb_048653_020 Hb_002918_150--Hb_048653_020 Hb_011120_020 Hb_011120_020 Hb_002918_150--Hb_011120_020 Hb_000220_090 Hb_000220_090 Hb_002918_150--Hb_000220_090 Hb_138575_010 Hb_138575_010 Hb_002918_150--Hb_138575_010 Hb_009838_060 Hb_009838_060 Hb_002918_150--Hb_009838_060 Hb_002639_100 Hb_002639_100 Hb_006935_010--Hb_002639_100 Hb_006935_010--Hb_000038_040 Hb_006846_020 Hb_006846_020 Hb_006935_010--Hb_006846_020 Hb_001049_160 Hb_001049_160 Hb_006935_010--Hb_001049_160 Hb_007382_100 Hb_007382_100 Hb_006935_010--Hb_007382_100 Hb_018790_080 Hb_018790_080 Hb_006935_010--Hb_018790_080 Hb_000803_060--Hb_012787_040 Hb_000803_060--Hb_006414_020 Hb_001258_150 Hb_001258_150 Hb_000803_060--Hb_001258_150 Hb_000803_060--Hb_001489_120 Hb_003752_120 Hb_003752_120 Hb_000803_060--Hb_003752_120 Hb_004032_310 Hb_004032_310 Hb_000803_060--Hb_004032_310 Hb_002272_140 Hb_002272_140 Hb_000103_400--Hb_002272_140 Hb_000181_080 Hb_000181_080 Hb_000103_400--Hb_000181_080 Hb_000473_080 Hb_000473_080 Hb_000103_400--Hb_000473_080 Hb_000103_400--Hb_006414_020 Hb_000359_080 Hb_000359_080 Hb_000103_400--Hb_000359_080 Hb_000103_400--Hb_000803_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.033164 2.82825 0.308162 0.539302 0.248958 0.101107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.152989 0.300696 0.10779 0.415261 0.239042

CAGE analysis