Hb_000812_040

Information

Type -
Description -
Location Contig812: 53118-55975
Sequence    

Annotation

kegg
ID pop:POPTR_0004s14500g
description zinc finger family protein
nr
ID XP_006384380.1
description zinc finger family protein [Populus trichocarpa]
swissprot
ID Q5RF77
description E3 ubiquitin-protein ligase CHFR OS=Pongo abelii GN=CHFR PE=2 SV=1
trembl
ID B9N5A6
description Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0004s14500g PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase chfr

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59273: 29434-56168 , PASA_asmbl_59277: 52241-53512 , PASA_asmbl_59278: 53962-54089
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000812_040 0.0 - - zinc finger family protein [Populus trichocarpa]
2 Hb_032927_010 0.0711247726 - - -
3 Hb_067776_010 0.0760747465 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
4 Hb_152554_010 0.1076304529 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
5 Hb_006502_080 0.1076403695 - - -
6 Hb_140291_010 0.1157870026 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
7 Hb_022250_130 0.1160991317 - - inositol hexaphosphate kinase, putative [Ricinus communis]
8 Hb_002007_180 0.1167360477 - - PREDICTED: uncharacterized protein LOC105647525 [Jatropha curcas]
9 Hb_000080_060 0.1175102017 - - RNA polymerase I, II and III subunit RPB8, partial [Manihot esculenta]
10 Hb_076875_020 0.1226098141 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
11 Hb_136731_010 0.1228650977 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
12 Hb_007188_020 0.1279942113 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
13 Hb_007441_270 0.1285536508 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
14 Hb_005862_010 0.1318789236 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
15 Hb_009543_030 0.1330164937 - - prefoldin subunit 1 [Jatropha curcas]
16 Hb_028420_020 0.1349660315 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
17 Hb_041392_010 0.1358448779 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
18 Hb_021238_050 0.1364828929 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012305_050 0.1409959217 - - unnamed protein product [Coffea canephora]
20 Hb_003038_210 0.1415445603 - - hypothetical protein B456_006G076400 [Gossypium raimondii]

Gene co-expression network

sample Hb_000812_040 Hb_000812_040 Hb_032927_010 Hb_032927_010 Hb_000812_040--Hb_032927_010 Hb_067776_010 Hb_067776_010 Hb_000812_040--Hb_067776_010 Hb_152554_010 Hb_152554_010 Hb_000812_040--Hb_152554_010 Hb_006502_080 Hb_006502_080 Hb_000812_040--Hb_006502_080 Hb_140291_010 Hb_140291_010 Hb_000812_040--Hb_140291_010 Hb_022250_130 Hb_022250_130 Hb_000812_040--Hb_022250_130 Hb_032927_010--Hb_067776_010 Hb_032927_010--Hb_006502_080 Hb_007188_020 Hb_007188_020 Hb_032927_010--Hb_007188_020 Hb_032927_010--Hb_152554_010 Hb_136731_010 Hb_136731_010 Hb_032927_010--Hb_136731_010 Hb_007441_270 Hb_007441_270 Hb_067776_010--Hb_007441_270 Hb_000648_030 Hb_000648_030 Hb_067776_010--Hb_000648_030 Hb_012675_070 Hb_012675_070 Hb_067776_010--Hb_012675_070 Hb_000003_730 Hb_000003_730 Hb_067776_010--Hb_000003_730 Hb_152554_010--Hb_007188_020 Hb_006487_060 Hb_006487_060 Hb_152554_010--Hb_006487_060 Hb_003861_040 Hb_003861_040 Hb_152554_010--Hb_003861_040 Hb_001377_180 Hb_001377_180 Hb_152554_010--Hb_001377_180 Hb_000176_120 Hb_000176_120 Hb_152554_010--Hb_000176_120 Hb_007012_020 Hb_007012_020 Hb_006502_080--Hb_007012_020 Hb_006502_080--Hb_136731_010 Hb_006502_080--Hb_067776_010 Hb_000329_770 Hb_000329_770 Hb_006502_080--Hb_000329_770 Hb_096490_020 Hb_096490_020 Hb_140291_010--Hb_096490_020 Hb_041392_010 Hb_041392_010 Hb_140291_010--Hb_041392_010 Hb_002007_180 Hb_002007_180 Hb_140291_010--Hb_002007_180 Hb_000416_070 Hb_000416_070 Hb_140291_010--Hb_000416_070 Hb_003656_140 Hb_003656_140 Hb_140291_010--Hb_003656_140 Hb_185830_020 Hb_185830_020 Hb_022250_130--Hb_185830_020 Hb_012305_050 Hb_012305_050 Hb_022250_130--Hb_012305_050 Hb_000103_180 Hb_000103_180 Hb_022250_130--Hb_000103_180 Hb_003847_080 Hb_003847_080 Hb_022250_130--Hb_003847_080 Hb_006332_010 Hb_006332_010 Hb_022250_130--Hb_006332_010 Hb_010691_060 Hb_010691_060 Hb_022250_130--Hb_010691_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.1797 8.82883 13.0615 25.1168 15.8956 73.1566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.9152 36.0483 19.3209 21.2243 5.80906

CAGE analysis