Hb_000813_020

Information

Type -
Description -
Location Contig813: 11913-14660
Sequence    

Annotation

kegg
ID rcu:RCOM_0824740
description caspase, putative
nr
ID XP_012069137.1
description PREDICTED: metacaspase-3-like [Jatropha curcas]
swissprot
ID Q7XJE6
description Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1
trembl
ID A0A067L9W1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24903 PE=4 SV=1
Gene Ontology
ID GO:0004197
description metacaspase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000813_020 0.0 - - PREDICTED: metacaspase-3-like [Jatropha curcas]
2 Hb_170077_020 0.0557670515 - - PREDICTED: probable serine incorporator [Jatropha curcas]
3 Hb_002304_110 0.0698934279 - - hypothetical protein MIMGU_mgv1a023246mg [Erythranthe guttata]
4 Hb_000334_090 0.0832515086 - - hypothetical protein JCGZ_16789 [Jatropha curcas]
5 Hb_001257_140 0.0935127098 - - Gb:AAF02129.1, putative [Theobroma cacao]
6 Hb_001898_030 0.0937811477 - - protein kinase-coding resistance protein [Nicotiana repanda]
7 Hb_005144_150 0.0966814479 - - hypothetical protein VITISV_013572 [Vitis vinifera]
8 Hb_003849_170 0.0992439986 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
9 Hb_003858_070 0.0996293889 - - PREDICTED: uncharacterized protein LOC105647879 [Jatropha curcas]
10 Hb_034713_010 0.1017419493 - - PREDICTED: uncharacterized protein LOC105133378 [Populus euphratica]
11 Hb_030360_010 0.1031760289 - - -
12 Hb_004705_060 0.1043623246 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
13 Hb_000352_360 0.1074704556 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
14 Hb_009367_070 0.1080117737 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
15 Hb_019299_020 0.1095476673 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
16 Hb_003090_220 0.1103564271 - - PREDICTED: copper transporter 4 [Jatropha curcas]
17 Hb_000207_060 0.1138682701 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
18 Hb_005648_020 0.1140002622 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
19 Hb_001818_010 0.1165297507 - - Disease resistance response protein, putative [Ricinus communis]
20 Hb_017061_010 0.118118032 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_000813_020 Hb_000813_020 Hb_170077_020 Hb_170077_020 Hb_000813_020--Hb_170077_020 Hb_002304_110 Hb_002304_110 Hb_000813_020--Hb_002304_110 Hb_000334_090 Hb_000334_090 Hb_000813_020--Hb_000334_090 Hb_001257_140 Hb_001257_140 Hb_000813_020--Hb_001257_140 Hb_001898_030 Hb_001898_030 Hb_000813_020--Hb_001898_030 Hb_005144_150 Hb_005144_150 Hb_000813_020--Hb_005144_150 Hb_003849_170 Hb_003849_170 Hb_170077_020--Hb_003849_170 Hb_170077_020--Hb_001257_140 Hb_005648_020 Hb_005648_020 Hb_170077_020--Hb_005648_020 Hb_000352_360 Hb_000352_360 Hb_170077_020--Hb_000352_360 Hb_003607_080 Hb_003607_080 Hb_170077_020--Hb_003607_080 Hb_002304_110--Hb_001898_030 Hb_034713_010 Hb_034713_010 Hb_002304_110--Hb_034713_010 Hb_009367_070 Hb_009367_070 Hb_002304_110--Hb_009367_070 Hb_002304_110--Hb_000334_090 Hb_017061_010 Hb_017061_010 Hb_002304_110--Hb_017061_010 Hb_000086_510 Hb_000086_510 Hb_000334_090--Hb_000086_510 Hb_085829_010 Hb_085829_010 Hb_000334_090--Hb_085829_010 Hb_000334_090--Hb_170077_020 Hb_000334_090--Hb_000352_360 Hb_001257_140--Hb_005144_150 Hb_001257_140--Hb_003849_170 Hb_001257_140--Hb_000352_360 Hb_010863_020 Hb_010863_020 Hb_001257_140--Hb_010863_020 Hb_003858_070 Hb_003858_070 Hb_001257_140--Hb_003858_070 Hb_001898_030--Hb_017061_010 Hb_001006_300 Hb_001006_300 Hb_001898_030--Hb_001006_300 Hb_090210_010 Hb_090210_010 Hb_001898_030--Hb_090210_010 Hb_002326_090 Hb_002326_090 Hb_001898_030--Hb_002326_090 Hb_007292_060 Hb_007292_060 Hb_001898_030--Hb_007292_060 Hb_005144_150--Hb_003858_070 Hb_005144_150--Hb_001006_300 Hb_005144_150--Hb_017061_010 Hb_005144_150--Hb_003849_170 Hb_005144_150--Hb_001898_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0508938 0.141571 0.683028 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.048862 0.0632813

CAGE analysis