Hb_000813_070

Information

Type -
Description -
Location Contig813: 53056-54514
Sequence    

Annotation

kegg
ID rcu:RCOM_1438930
description hypothetical protein
nr
ID XP_002512705.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9RG36
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1438930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59293: 53403-53522
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000813_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005711_030 0.069268864 - - hypothetical protein RCOM_0460020 [Ricinus communis]
3 Hb_002151_070 0.0715347462 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Jatropha curcas]
4 Hb_001289_070 0.0795705655 - - PREDICTED: protein YLS9-like [Jatropha curcas]
5 Hb_020375_010 0.0851199108 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
6 Hb_001279_400 0.0855043263 - - PREDICTED: uncharacterized protein LOC105633544 [Jatropha curcas]
7 Hb_001688_050 0.0868994158 - - PREDICTED: reticulon-like protein B9 [Jatropha curcas]
8 Hb_000103_440 0.0904687402 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]
9 Hb_001511_220 0.0918376438 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
10 Hb_133974_010 0.0923318571 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
11 Hb_182869_010 0.0929656242 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
12 Hb_000368_050 0.093428331 - - beta-galactosidase, putative [Ricinus communis]
13 Hb_008461_060 0.0941322298 - - hypothetical protein JCGZ_17379 [Jatropha curcas]
14 Hb_005000_150 0.0962107236 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002973_050 0.0971927249 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
16 Hb_004650_120 0.0981000161 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
17 Hb_004787_120 0.098188582 - - PREDICTED: transcription factor TCP14 [Jatropha curcas]
18 Hb_001140_290 0.0992383641 - - hypothetical protein JCGZ_26107 [Jatropha curcas]
19 Hb_004917_020 0.0992905174 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF2.2-like isoform X2 [Populus euphratica]
20 Hb_003058_240 0.1015804179 - - PREDICTED: tubulin beta-5 chain-like [Jatropha curcas]

Gene co-expression network

sample Hb_000813_070 Hb_000813_070 Hb_005711_030 Hb_005711_030 Hb_000813_070--Hb_005711_030 Hb_002151_070 Hb_002151_070 Hb_000813_070--Hb_002151_070 Hb_001289_070 Hb_001289_070 Hb_000813_070--Hb_001289_070 Hb_020375_010 Hb_020375_010 Hb_000813_070--Hb_020375_010 Hb_001279_400 Hb_001279_400 Hb_000813_070--Hb_001279_400 Hb_001688_050 Hb_001688_050 Hb_000813_070--Hb_001688_050 Hb_005711_030--Hb_001289_070 Hb_133974_010 Hb_133974_010 Hb_005711_030--Hb_133974_010 Hb_000103_440 Hb_000103_440 Hb_005711_030--Hb_000103_440 Hb_004650_120 Hb_004650_120 Hb_005711_030--Hb_004650_120 Hb_000017_180 Hb_000017_180 Hb_005711_030--Hb_000017_180 Hb_001140_290 Hb_001140_290 Hb_002151_070--Hb_001140_290 Hb_005000_150 Hb_005000_150 Hb_002151_070--Hb_005000_150 Hb_002151_070--Hb_000103_440 Hb_002151_070--Hb_005711_030 Hb_002151_070--Hb_001289_070 Hb_015807_130 Hb_015807_130 Hb_001289_070--Hb_015807_130 Hb_001289_070--Hb_005000_150 Hb_003152_020 Hb_003152_020 Hb_001289_070--Hb_003152_020 Hb_000077_250 Hb_000077_250 Hb_020375_010--Hb_000077_250 Hb_000000_050 Hb_000000_050 Hb_020375_010--Hb_000000_050 Hb_009522_010 Hb_009522_010 Hb_020375_010--Hb_009522_010 Hb_004787_120 Hb_004787_120 Hb_020375_010--Hb_004787_120 Hb_000620_040 Hb_000620_040 Hb_020375_010--Hb_000620_040 Hb_004917_020 Hb_004917_020 Hb_001279_400--Hb_004917_020 Hb_002973_050 Hb_002973_050 Hb_001279_400--Hb_002973_050 Hb_002171_050 Hb_002171_050 Hb_001279_400--Hb_002171_050 Hb_002894_080 Hb_002894_080 Hb_001279_400--Hb_002894_080 Hb_001279_400--Hb_000000_050 Hb_001688_050--Hb_000103_440 Hb_001688_050--Hb_001289_070 Hb_001688_050--Hb_015807_130 Hb_003058_240 Hb_003058_240 Hb_001688_050--Hb_003058_240 Hb_004650_110 Hb_004650_110 Hb_001688_050--Hb_004650_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0413213 0.352619 0.688665 3.76267 0.0155372 0.0291327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.142991 2.65819

CAGE analysis