Hb_000813_080

Information

Type -
Description -
Location Contig813: 68582-70102
Sequence    

Annotation

kegg
ID rcu:RCOM_0824500
description caspase, putative
nr
ID XP_002525857.1
description caspase, putative [Ricinus communis]
swissprot
ID Q7XJE6
description Metacaspase-1 OS=Arabidopsis thaliana GN=AMC1 PE=1 SV=1
trembl
ID B9SIN8
description Caspase, putative OS=Ricinus communis GN=RCOM_0824500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000813_080 0.0 - - caspase, putative [Ricinus communis]
2 Hb_054649_020 0.1489748672 - - PREDICTED: uncharacterized protein LOC102629934 [Citrus sinensis]
3 Hb_001529_030 0.2154688789 - - hypothetical protein PRUPE_ppa024472mg, partial [Prunus persica]
4 Hb_127819_010 0.2425941838 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
5 Hb_022534_020 0.2463123616 - - PREDICTED: uncharacterized protein LOC103422158 [Malus domestica]
6 Hb_125981_010 0.2468565643 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
7 Hb_007292_030 0.2488613875 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001250_120 0.2541313334 - - PREDICTED: homeobox protein knotted-1-like 6 [Jatropha curcas]
9 Hb_003849_230 0.2564982699 - - PREDICTED: NEP1-interacting protein 2-like [Jatropha curcas]
10 Hb_000575_130 0.2566760545 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Populus euphratica]
11 Hb_001565_120 0.2567090508 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X1 [Jatropha curcas]
12 Hb_000563_450 0.2573011467 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
13 Hb_116685_010 0.2573495625 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
14 Hb_004352_020 0.2646763362 - - o-methyltransferase, putative [Ricinus communis]
15 Hb_113388_010 0.2670577737 - - conserved hypothetical protein [Ricinus communis]
16 Hb_172864_010 0.2682506721 - - PREDICTED: 3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase-like [Jatropha curcas]
17 Hb_090459_010 0.2712353429 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
18 Hb_155642_010 0.2714630298 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
19 Hb_000380_070 0.2751355881 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003893_020 0.2822894132 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000813_080 Hb_000813_080 Hb_054649_020 Hb_054649_020 Hb_000813_080--Hb_054649_020 Hb_001529_030 Hb_001529_030 Hb_000813_080--Hb_001529_030 Hb_127819_010 Hb_127819_010 Hb_000813_080--Hb_127819_010 Hb_022534_020 Hb_022534_020 Hb_000813_080--Hb_022534_020 Hb_125981_010 Hb_125981_010 Hb_000813_080--Hb_125981_010 Hb_007292_030 Hb_007292_030 Hb_000813_080--Hb_007292_030 Hb_001250_120 Hb_001250_120 Hb_054649_020--Hb_001250_120 Hb_017651_010 Hb_017651_010 Hb_054649_020--Hb_017651_010 Hb_167316_010 Hb_167316_010 Hb_054649_020--Hb_167316_010 Hb_000579_150 Hb_000579_150 Hb_054649_020--Hb_000579_150 Hb_097433_020 Hb_097433_020 Hb_054649_020--Hb_097433_020 Hb_001277_140 Hb_001277_140 Hb_001529_030--Hb_001277_140 Hb_082219_010 Hb_082219_010 Hb_001529_030--Hb_082219_010 Hb_012760_180 Hb_012760_180 Hb_001529_030--Hb_012760_180 Hb_152764_010 Hb_152764_010 Hb_001529_030--Hb_152764_010 Hb_023024_010 Hb_023024_010 Hb_001529_030--Hb_023024_010 Hb_000960_010 Hb_000960_010 Hb_127819_010--Hb_000960_010 Hb_136886_010 Hb_136886_010 Hb_127819_010--Hb_136886_010 Hb_090459_010 Hb_090459_010 Hb_127819_010--Hb_090459_010 Hb_001565_120 Hb_001565_120 Hb_127819_010--Hb_001565_120 Hb_155642_010 Hb_155642_010 Hb_127819_010--Hb_155642_010 Hb_127819_010--Hb_125981_010 Hb_000045_110 Hb_000045_110 Hb_022534_020--Hb_000045_110 Hb_000426_060 Hb_000426_060 Hb_022534_020--Hb_000426_060 Hb_002851_050 Hb_002851_050 Hb_022534_020--Hb_002851_050 Hb_000994_090 Hb_000994_090 Hb_022534_020--Hb_000994_090 Hb_000426_070 Hb_000426_070 Hb_022534_020--Hb_000426_070 Hb_000592_040 Hb_000592_040 Hb_022534_020--Hb_000592_040 Hb_116685_010 Hb_116685_010 Hb_125981_010--Hb_116685_010 Hb_125981_010--Hb_155642_010 Hb_125981_010--Hb_090459_010 Hb_003893_020 Hb_003893_020 Hb_125981_010--Hb_003893_020 Hb_125981_010--Hb_000960_010 Hb_003849_230 Hb_003849_230 Hb_007292_030--Hb_003849_230 Hb_000575_130 Hb_000575_130 Hb_007292_030--Hb_000575_130 Hb_000563_450 Hb_000563_450 Hb_007292_030--Hb_000563_450 Hb_000486_050 Hb_000486_050 Hb_007292_030--Hb_000486_050 Hb_113388_010 Hb_113388_010 Hb_007292_030--Hb_113388_010 Hb_000380_070 Hb_000380_070 Hb_007292_030--Hb_000380_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0187035 0.208648 0 0.0143305 0 0.0396722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis