Hb_000814_090

Information

Type -
Description -
Location Contig814: 74334-79212
Sequence    

Annotation

kegg
ID rcu:RCOM_0290900
description hypothetical protein
nr
ID XP_002533028.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8W3M6
description Ubiquitin-like domain-containing CTD phosphatase OS=Arabidopsis thaliana GN=At4g06599 PE=2 SV=1
trembl
ID B9T459
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0290900 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ubiquitin-like domain-containing ctd phosphatase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59305: 74316-79304
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000814_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002725_070 0.0652669248 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
3 Hb_005635_010 0.0658443424 - - PREDICTED: cleft lip and palate transmembrane protein 1 homolog [Jatropha curcas]
4 Hb_006913_040 0.0781142786 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
5 Hb_001019_170 0.0807128663 - - PREDICTED: uncharacterized protein LOC105639322 [Jatropha curcas]
6 Hb_000078_100 0.0813127277 - - PREDICTED: topless-related protein 4-like isoform X2 [Jatropha curcas]
7 Hb_002820_040 0.0820793456 - - conserved hypothetical protein [Ricinus communis]
8 Hb_042083_070 0.0850710126 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
9 Hb_000017_340 0.086766406 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
10 Hb_004608_020 0.0880813863 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
11 Hb_000849_100 0.0911501332 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
12 Hb_000076_080 0.0934630745 - - PREDICTED: protein MOS2 [Jatropha curcas]
13 Hb_003384_030 0.0939911728 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
14 Hb_000732_020 0.0958209066 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
15 Hb_004881_050 0.096172961 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
16 Hb_000631_150 0.096329702 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
17 Hb_003716_020 0.0964942184 - - PREDICTED: putative vesicle-associated membrane protein 726 [Jatropha curcas]
18 Hb_000318_140 0.0978148777 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
19 Hb_018663_020 0.0981266185 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
20 Hb_005000_100 0.0984453799 - - PCI domain-containing protein 2 [Morus notabilis]

Gene co-expression network

sample Hb_000814_090 Hb_000814_090 Hb_002725_070 Hb_002725_070 Hb_000814_090--Hb_002725_070 Hb_005635_010 Hb_005635_010 Hb_000814_090--Hb_005635_010 Hb_006913_040 Hb_006913_040 Hb_000814_090--Hb_006913_040 Hb_001019_170 Hb_001019_170 Hb_000814_090--Hb_001019_170 Hb_000078_100 Hb_000078_100 Hb_000814_090--Hb_000078_100 Hb_002820_040 Hb_002820_040 Hb_000814_090--Hb_002820_040 Hb_005295_040 Hb_005295_040 Hb_002725_070--Hb_005295_040 Hb_042083_070 Hb_042083_070 Hb_002725_070--Hb_042083_070 Hb_002725_070--Hb_002820_040 Hb_002725_070--Hb_000078_100 Hb_117950_020 Hb_117950_020 Hb_002725_070--Hb_117950_020 Hb_005635_010--Hb_005295_040 Hb_001040_160 Hb_001040_160 Hb_005635_010--Hb_001040_160 Hb_005635_010--Hb_002725_070 Hb_003299_090 Hb_003299_090 Hb_005635_010--Hb_003299_090 Hb_005635_010--Hb_000078_100 Hb_000645_150 Hb_000645_150 Hb_006913_040--Hb_000645_150 Hb_001829_010 Hb_001829_010 Hb_006913_040--Hb_001829_010 Hb_006913_040--Hb_001019_170 Hb_006913_040--Hb_002820_040 Hb_002097_090 Hb_002097_090 Hb_006913_040--Hb_002097_090 Hb_000333_100 Hb_000333_100 Hb_006913_040--Hb_000333_100 Hb_008714_020 Hb_008714_020 Hb_001019_170--Hb_008714_020 Hb_008695_120 Hb_008695_120 Hb_001019_170--Hb_008695_120 Hb_003581_120 Hb_003581_120 Hb_001019_170--Hb_003581_120 Hb_002400_180 Hb_002400_180 Hb_001019_170--Hb_002400_180 Hb_000076_080 Hb_000076_080 Hb_001019_170--Hb_000076_080 Hb_000078_100--Hb_117950_020 Hb_000078_100--Hb_002820_040 Hb_004608_020 Hb_004608_020 Hb_000078_100--Hb_004608_020 Hb_000631_150 Hb_000631_150 Hb_000078_100--Hb_000631_150 Hb_000318_140 Hb_000318_140 Hb_002820_040--Hb_000318_140 Hb_007416_310 Hb_007416_310 Hb_002820_040--Hb_007416_310 Hb_002820_040--Hb_000645_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.9691 36.7707 14.4129 20.4863 86.1262 121.3
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.867 25.2768 32.2246 35.7934 4.95955

CAGE analysis