Hb_000815_040

Information

Type transcription factor
Description TF Family: M-type
Location Contig815: 57216-65320
Sequence    

Annotation

kegg
ID rcu:RCOM_0837230
description mads box protein, putative
nr
ID KDP41216.1
description hypothetical protein JCGZ_15623 [Jatropha curcas]
swissprot
ID Q9M2K8
description Agamous-like MADS-box protein AGL18 OS=Arabidopsis thaliana GN=AGL18 PE=2 SV=1
trembl
ID A0A067KYG7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15623 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mads-box family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59344: 59173-62794
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000815_040 0.0 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
2 Hb_001604_080 0.0468773308 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
3 Hb_002890_140 0.0504442415 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
4 Hb_000103_560 0.0575624745 - - ADP-ribosylation factor, putative [Ricinus communis]
5 Hb_002214_040 0.0605809219 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
6 Hb_000529_190 0.0621175028 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
7 Hb_118707_030 0.0631586447 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
8 Hb_010180_020 0.0664340187 - - hypothetical protein glysoja_030394 [Glycine soja]
9 Hb_000926_250 0.0674180576 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
10 Hb_000832_140 0.0687993229 - - actin depolymerizing factor 4 [Hevea brasiliensis]
11 Hb_000103_090 0.0688772006 - - PREDICTED: protein RDM1 [Jatropha curcas]
12 Hb_003266_050 0.0693814928 - - PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]
13 Hb_000054_100 0.070434663 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
14 Hb_003058_130 0.0715307 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
15 Hb_000329_030 0.0718283044 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
16 Hb_000613_140 0.0736060627 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
17 Hb_011689_080 0.073681123 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
18 Hb_063716_050 0.076915574 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
19 Hb_033834_040 0.0778041912 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009557_070 0.0779570729 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000815_040 Hb_000815_040 Hb_001604_080 Hb_001604_080 Hb_000815_040--Hb_001604_080 Hb_002890_140 Hb_002890_140 Hb_000815_040--Hb_002890_140 Hb_000103_560 Hb_000103_560 Hb_000815_040--Hb_000103_560 Hb_002214_040 Hb_002214_040 Hb_000815_040--Hb_002214_040 Hb_000529_190 Hb_000529_190 Hb_000815_040--Hb_000529_190 Hb_118707_030 Hb_118707_030 Hb_000815_040--Hb_118707_030 Hb_010180_020 Hb_010180_020 Hb_001604_080--Hb_010180_020 Hb_001604_080--Hb_000103_560 Hb_063716_050 Hb_063716_050 Hb_001604_080--Hb_063716_050 Hb_000926_250 Hb_000926_250 Hb_001604_080--Hb_000926_250 Hb_001604_080--Hb_000529_190 Hb_000103_090 Hb_000103_090 Hb_002890_140--Hb_000103_090 Hb_002890_140--Hb_000103_560 Hb_002890_140--Hb_000529_190 Hb_033834_040 Hb_033834_040 Hb_002890_140--Hb_033834_040 Hb_000832_140 Hb_000832_140 Hb_002890_140--Hb_000832_140 Hb_000103_560--Hb_063716_050 Hb_000103_560--Hb_000832_140 Hb_002078_150 Hb_002078_150 Hb_000103_560--Hb_002078_150 Hb_000103_560--Hb_000529_190 Hb_002214_040--Hb_000529_190 Hb_002214_040--Hb_000832_140 Hb_002214_040--Hb_118707_030 Hb_002477_070 Hb_002477_070 Hb_002214_040--Hb_002477_070 Hb_009838_080 Hb_009838_080 Hb_002214_040--Hb_009838_080 Hb_000529_190--Hb_063716_050 Hb_001789_070 Hb_001789_070 Hb_000529_190--Hb_001789_070 Hb_000529_190--Hb_000832_140 Hb_002205_070 Hb_002205_070 Hb_118707_030--Hb_002205_070 Hb_011689_080 Hb_011689_080 Hb_118707_030--Hb_011689_080 Hb_000656_400 Hb_000656_400 Hb_118707_030--Hb_000656_400 Hb_000107_620 Hb_000107_620 Hb_118707_030--Hb_000107_620
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.32902 1.30359 2.05602 2.21659 2.82244 5.31743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.28034 6.15812 3.41746 2.40534 1.5696

CAGE analysis