Hb_000815_050

Information

Type -
Description -
Location Contig815: 72062-73514
Sequence    

Annotation

kegg
ID pop:POPTR_0008s08790g
description POPTRDRAFT_656451; expansin 4 family protein
nr
ID XP_011013147.1
description PREDICTED: expansin-A1 [Populus euphratica]
swissprot
ID Q9C554
description Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1
trembl
ID B9HI84
description Expansin 4 family protein OS=Populus trichocarpa GN=POPTR_0008s08790g PE=3 SV=1
Gene Ontology
ID GO:0005576
description expansin 4 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59345: 71932-73580
cDNA
(Sanger)
(ID:Location)		 028_L17.ab1: 72539-73576

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000815_050 0.0 - - PREDICTED: expansin-A1 [Populus euphratica]
2 Hb_000742_070 0.0747508199 - - PREDICTED: monoglyceride lipase isoform X2 [Bubalus bubalis]
3 Hb_023582_030 0.0751705317 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_000816_140 0.0751939011 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
5 Hb_000933_030 0.0773630081 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
6 Hb_004079_070 0.081462517 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
7 Hb_000134_190 0.0817051262 - - hypothetical protein JCGZ_16725 [Jatropha curcas]
8 Hb_083963_010 0.0824409244 - - PREDICTED: probable carboxylesterase 8 [Jatropha curcas]
9 Hb_012653_050 0.0843848974 - - hypothetical protein RCOM_0460020 [Ricinus communis]
10 Hb_017110_030 0.0844233072 - - PREDICTED: subtilisin-like protease SBT5.4 [Jatropha curcas]
11 Hb_002740_140 0.0905678817 - - hypothetical protein L484_022679 [Morus notabilis]
12 Hb_011549_040 0.0935320946 - - -
13 Hb_010883_170 0.0959924878 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
14 Hb_004686_040 0.0962539849 - - hypothetical protein POPTR_0016s05690g [Populus trichocarpa]
15 Hb_004162_200 0.1008852639 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
16 Hb_001956_130 0.1009650941 - - catalytic, putative [Ricinus communis]
17 Hb_186458_010 0.1019781634 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
18 Hb_002311_030 0.1034571346 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000057_090 0.1057475096 - - hypothetical protein RCOM_1494490 [Ricinus communis]
20 Hb_162450_010 0.106579133 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]

Gene co-expression network

sample Hb_000815_050 Hb_000815_050 Hb_000742_070 Hb_000742_070 Hb_000815_050--Hb_000742_070 Hb_023582_030 Hb_023582_030 Hb_000815_050--Hb_023582_030 Hb_000816_140 Hb_000816_140 Hb_000815_050--Hb_000816_140 Hb_000933_030 Hb_000933_030 Hb_000815_050--Hb_000933_030 Hb_004079_070 Hb_004079_070 Hb_000815_050--Hb_004079_070 Hb_000134_190 Hb_000134_190 Hb_000815_050--Hb_000134_190 Hb_000742_070--Hb_023582_030 Hb_017110_030 Hb_017110_030 Hb_000742_070--Hb_017110_030 Hb_000742_070--Hb_000134_190 Hb_000742_070--Hb_000933_030 Hb_083963_010 Hb_083963_010 Hb_000742_070--Hb_083963_010 Hb_186458_010 Hb_186458_010 Hb_000742_070--Hb_186458_010 Hb_023582_030--Hb_000134_190 Hb_023582_030--Hb_017110_030 Hb_023582_030--Hb_000933_030 Hb_004686_040 Hb_004686_040 Hb_023582_030--Hb_004686_040 Hb_023582_030--Hb_186458_010 Hb_010883_170 Hb_010883_170 Hb_000816_140--Hb_010883_170 Hb_007113_060 Hb_007113_060 Hb_000816_140--Hb_007113_060 Hb_006922_120 Hb_006922_120 Hb_000816_140--Hb_006922_120 Hb_012653_050 Hb_012653_050 Hb_000816_140--Hb_012653_050 Hb_000057_090 Hb_000057_090 Hb_000816_140--Hb_000057_090 Hb_011549_040 Hb_011549_040 Hb_000933_030--Hb_011549_040 Hb_166360_010 Hb_166360_010 Hb_000933_030--Hb_166360_010 Hb_004218_270 Hb_004218_270 Hb_000933_030--Hb_004218_270 Hb_000933_030--Hb_000134_190 Hb_004079_070--Hb_011549_040 Hb_004079_070--Hb_000933_030 Hb_004079_070--Hb_000816_140 Hb_068804_190 Hb_068804_190 Hb_004079_070--Hb_068804_190 Hb_004079_070--Hb_166360_010 Hb_000134_190--Hb_004686_040 Hb_000134_190--Hb_017110_030 Hb_000134_190--Hb_186458_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0941509 32.6693 66.2442 0.0183154 0.0385502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.417356 0.0656587 0.0609964 0.60522 25.8512

CAGE analysis