Hb_000815_090

Information

Type -
Description -
Location Contig815: 117377-118488
Sequence    

Annotation

kegg
ID rcu:RCOM_0837380
description hypothetical protein
nr
ID XP_012067673.1
description PREDICTED: uncharacterized protein LOC105630464 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KYM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15629 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59353: 116933-118406 , PASA_asmbl_59354: 117623-118872
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000815_090 0.0 - - PREDICTED: uncharacterized protein LOC105630464 isoform X1 [Jatropha curcas]
2 Hb_132840_170 0.0761362858 transcription factor TF Family: NAC Transcription factor [Theobroma cacao]
3 Hb_013394_120 0.0935597194 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
4 Hb_002284_160 0.0939620868 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
5 Hb_000002_500 0.0948617808 - - PREDICTED: uncharacterized protein LOC105632094 isoform X1 [Jatropha curcas]
6 Hb_001115_070 0.0954148212 - - RecName: Full=CASP-like protein 2C1; Short=PtCASPL2C1 [Populus trichocarpa]
7 Hb_000818_090 0.0968554404 - - glutamate receptor 3 plant, putative [Ricinus communis]
8 Hb_001789_120 0.1078674042 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
9 Hb_000608_290 0.1081526994 - - thioredoxin f-type, putative [Ricinus communis]
10 Hb_010222_060 0.1097770936 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_102179_010 0.1152683827 - - protein binding protein, putative [Ricinus communis]
12 Hb_014700_030 0.1156059914 - - tryptophan synthase beta chain, putative [Ricinus communis]
13 Hb_173387_010 0.1161634317 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
14 Hb_004880_050 0.1166405667 - - conserved hypothetical protein [Ricinus communis]
15 Hb_025557_060 0.1195978332 transcription factor TF Family: MYB Myb-related protein 306, putative isoform 1 [Theobroma cacao]
16 Hb_002842_010 0.1220123226 - - sulfate transporter, putative [Ricinus communis]
17 Hb_003435_030 0.1246112757 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
18 Hb_002400_260 0.1262042155 - - catalytic, putative [Ricinus communis]
19 Hb_018591_020 0.1264641938 - - Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor, putative [Ricinus communis]
20 Hb_000167_100 0.1269929074 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000815_090 Hb_000815_090 Hb_132840_170 Hb_132840_170 Hb_000815_090--Hb_132840_170 Hb_013394_120 Hb_013394_120 Hb_000815_090--Hb_013394_120 Hb_002284_160 Hb_002284_160 Hb_000815_090--Hb_002284_160 Hb_000002_500 Hb_000002_500 Hb_000815_090--Hb_000002_500 Hb_001115_070 Hb_001115_070 Hb_000815_090--Hb_001115_070 Hb_000818_090 Hb_000818_090 Hb_000815_090--Hb_000818_090 Hb_132840_170--Hb_013394_120 Hb_010222_060 Hb_010222_060 Hb_132840_170--Hb_010222_060 Hb_173387_010 Hb_173387_010 Hb_132840_170--Hb_173387_010 Hb_009522_020 Hb_009522_020 Hb_132840_170--Hb_009522_020 Hb_014700_030 Hb_014700_030 Hb_132840_170--Hb_014700_030 Hb_001789_120 Hb_001789_120 Hb_013394_120--Hb_001789_120 Hb_013394_120--Hb_010222_060 Hb_013394_120--Hb_000818_090 Hb_013394_120--Hb_009522_020 Hb_013394_120--Hb_014700_030 Hb_002284_160--Hb_001115_070 Hb_002284_160--Hb_000002_500 Hb_004017_030 Hb_004017_030 Hb_002284_160--Hb_004017_030 Hb_010136_010 Hb_010136_010 Hb_002284_160--Hb_010136_010 Hb_127629_010 Hb_127629_010 Hb_002284_160--Hb_127629_010 Hb_000046_120 Hb_000046_120 Hb_000002_500--Hb_000046_120 Hb_018591_020 Hb_018591_020 Hb_000002_500--Hb_018591_020 Hb_000002_500--Hb_001115_070 Hb_102179_010 Hb_102179_010 Hb_000002_500--Hb_102179_010 Hb_003435_030 Hb_003435_030 Hb_000002_500--Hb_003435_030 Hb_001115_070--Hb_127629_010 Hb_001115_070--Hb_010136_010 Hb_001115_070--Hb_004017_030 Hb_001115_070--Hb_018591_020 Hb_000818_090--Hb_001789_120 Hb_009393_090 Hb_009393_090 Hb_000818_090--Hb_009393_090 Hb_004880_050 Hb_004880_050 Hb_000818_090--Hb_004880_050 Hb_005365_010 Hb_005365_010 Hb_000818_090--Hb_005365_010 Hb_001100_070 Hb_001100_070 Hb_000818_090--Hb_001100_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.65918 4.39054 4.22244 0.0522543 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.102089 0 0.211818 7.09221

CAGE analysis