Hb_000815_100

Information

Type -
Description -
Location Contig815: 121115-123427
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000815_100 0.0 - - -
2 Hb_002192_070 0.1425057907 - - -
3 Hb_000849_150 0.1709448522 - - hypothetical protein JCGZ_15099 [Jatropha curcas]
4 Hb_007765_060 0.1934983524 - - Proliferating cell nuclear antigen [Theobroma cacao]
5 Hb_030414_050 0.1970342585 - - -
6 Hb_095471_010 0.2006389059 - - PREDICTED: putative sodium-coupled neutral amino acid transporter 7 [Jatropha curcas]
7 Hb_000544_040 0.2025559238 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
8 Hb_032264_130 0.2030722448 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
9 Hb_002897_040 0.2050682883 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
10 Hb_012384_050 0.2057519452 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
11 Hb_104812_030 0.2085488725 - - hypothetical protein POPTR_0178s00210g [Populus trichocarpa]
12 Hb_004117_030 0.2116936854 - - PREDICTED: uncharacterized protein LOC104449809 [Eucalyptus grandis]
13 Hb_001691_050 0.2147697955 - - -
14 Hb_003813_200 0.2179917124 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
15 Hb_000465_120 0.2183276876 - - PREDICTED: uncharacterized protein LOC105632294 [Jatropha curcas]
16 Hb_085226_010 0.2204769199 - - hypothetical protein POPTR_0002s03930g [Populus trichocarpa]
17 Hb_002025_230 0.2216230107 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
18 Hb_000025_750 0.2221129759 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
19 Hb_019936_010 0.2226177895 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]
20 Hb_000186_100 0.2226344348 - - PREDICTED: uncharacterized protein LOC105649284 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000815_100 Hb_000815_100 Hb_002192_070 Hb_002192_070 Hb_000815_100--Hb_002192_070 Hb_000849_150 Hb_000849_150 Hb_000815_100--Hb_000849_150 Hb_007765_060 Hb_007765_060 Hb_000815_100--Hb_007765_060 Hb_030414_050 Hb_030414_050 Hb_000815_100--Hb_030414_050 Hb_095471_010 Hb_095471_010 Hb_000815_100--Hb_095471_010 Hb_000544_040 Hb_000544_040 Hb_000815_100--Hb_000544_040 Hb_002192_070--Hb_000849_150 Hb_003813_200 Hb_003813_200 Hb_002192_070--Hb_003813_200 Hb_002192_070--Hb_000544_040 Hb_000025_750 Hb_000025_750 Hb_002192_070--Hb_000025_750 Hb_002897_040 Hb_002897_040 Hb_002192_070--Hb_002897_040 Hb_000849_150--Hb_000025_750 Hb_004032_460 Hb_004032_460 Hb_000849_150--Hb_004032_460 Hb_060437_010 Hb_060437_010 Hb_000849_150--Hb_060437_010 Hb_001408_090 Hb_001408_090 Hb_000849_150--Hb_001408_090 Hb_000849_150--Hb_002897_040 Hb_005725_070 Hb_005725_070 Hb_000849_150--Hb_005725_070 Hb_000740_070 Hb_000740_070 Hb_007765_060--Hb_000740_070 Hb_007765_060--Hb_005725_070 Hb_000487_100 Hb_000487_100 Hb_007765_060--Hb_000487_100 Hb_001956_050 Hb_001956_050 Hb_007765_060--Hb_001956_050 Hb_007765_060--Hb_000544_040 Hb_004117_030 Hb_004117_030 Hb_007765_060--Hb_004117_030 Hb_030414_050--Hb_060437_010 Hb_003050_090 Hb_003050_090 Hb_030414_050--Hb_003050_090 Hb_000692_170 Hb_000692_170 Hb_030414_050--Hb_000692_170 Hb_030414_050--Hb_002192_070 Hb_007416_200 Hb_007416_200 Hb_030414_050--Hb_007416_200 Hb_000093_130 Hb_000093_130 Hb_030414_050--Hb_000093_130 Hb_000313_320 Hb_000313_320 Hb_095471_010--Hb_000313_320 Hb_129067_010 Hb_129067_010 Hb_095471_010--Hb_129067_010 Hb_000365_260 Hb_000365_260 Hb_095471_010--Hb_000365_260 Hb_000465_120 Hb_000465_120 Hb_095471_010--Hb_000465_120 Hb_032264_130 Hb_032264_130 Hb_095471_010--Hb_032264_130 Hb_000544_040--Hb_000849_150 Hb_000544_040--Hb_005725_070 Hb_007305_010 Hb_007305_010 Hb_000544_040--Hb_007305_010 Hb_000300_540 Hb_000300_540 Hb_000544_040--Hb_000300_540 Hb_007786_010 Hb_007786_010 Hb_000544_040--Hb_007786_010 Hb_000173_370 Hb_000173_370 Hb_000544_040--Hb_000173_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.76928 0.255203 0.421433 0 1.21525 0.710213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.148793 0.233966 0.525303 0.118693 0.116516

CAGE analysis