Hb_000815_150

Information

Type transcription factor
Description TF Family: NAC
Location Contig815: 170937-172210
Sequence    

Annotation

kegg
ID rcu:RCOM_0837530
description NAC domain-containing protein, putative
nr
ID XP_002522466.1
description NAC domain-containing protein, putative [Ricinus communis]
swissprot
ID O49255
description NAC transcription factor 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1
trembl
ID B9S8Z7
description NAC domain-containing protein, putative OS=Ricinus communis GN=RCOM_0837530 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac transcription factor 29

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59359: 170643-172142
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000815_150 0.0 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
2 Hb_000126_040 0.1635790685 - - kinase, putative [Ricinus communis]
3 Hb_000333_120 0.1747203728 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
4 Hb_001863_450 0.1792963015 - - cryptochrome 1.2 [Populus tremula]
5 Hb_004166_010 0.1997562216 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
6 Hb_002995_030 0.2004536778 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001230_020 0.2013481511 - - hypothetical protein POPTR_0001s31610g [Populus trichocarpa]
8 Hb_010962_030 0.2048602554 - - kinase, putative [Ricinus communis]
9 Hb_001227_040 0.204938546 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
10 Hb_008253_040 0.206877916 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
11 Hb_108055_010 0.2091293068 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_000243_310 0.2113464108 - - lactoylglutathione lyase, putative [Ricinus communis]
13 Hb_003086_050 0.2159969428 - - calcium-dependent protein kinase, putative [Ricinus communis]
14 Hb_129399_010 0.2194851787 - - cytochrome P450, putative [Ricinus communis]
15 Hb_004994_190 0.2201947673 - - PREDICTED: (+)-neomenthol dehydrogenase-like [Jatropha curcas]
16 Hb_000417_030 0.2203272633 transcription factor TF Family: G2-like PREDICTED: putative two-component response regulator ARR19 [Jatropha curcas]
17 Hb_002045_220 0.2246970607 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
18 Hb_072276_010 0.2252688013 - - PREDICTED: elongation of fatty acids protein 3-like [Jatropha curcas]
19 Hb_003371_140 0.225765777 - - hypothetical protein POPTR_0001s23540g, partial [Populus trichocarpa]
20 Hb_000061_100 0.2266456554 - - hypothetical protein CISIN_1g0053742mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_000815_150 Hb_000815_150 Hb_000126_040 Hb_000126_040 Hb_000815_150--Hb_000126_040 Hb_000333_120 Hb_000333_120 Hb_000815_150--Hb_000333_120 Hb_001863_450 Hb_001863_450 Hb_000815_150--Hb_001863_450 Hb_004166_010 Hb_004166_010 Hb_000815_150--Hb_004166_010 Hb_002995_030 Hb_002995_030 Hb_000815_150--Hb_002995_030 Hb_001230_020 Hb_001230_020 Hb_000815_150--Hb_001230_020 Hb_000126_040--Hb_001230_020 Hb_000126_040--Hb_001863_450 Hb_000126_040--Hb_004166_010 Hb_001195_730 Hb_001195_730 Hb_000126_040--Hb_001195_730 Hb_000221_060 Hb_000221_060 Hb_000126_040--Hb_000221_060 Hb_108055_010 Hb_108055_010 Hb_000333_120--Hb_108055_010 Hb_000705_130 Hb_000705_130 Hb_000333_120--Hb_000705_130 Hb_015882_020 Hb_015882_020 Hb_000333_120--Hb_015882_020 Hb_000465_380 Hb_000465_380 Hb_000333_120--Hb_000465_380 Hb_010962_030 Hb_010962_030 Hb_000333_120--Hb_010962_030 Hb_010921_060 Hb_010921_060 Hb_000333_120--Hb_010921_060 Hb_001863_450--Hb_004166_010 Hb_004466_070 Hb_004466_070 Hb_001863_450--Hb_004466_070 Hb_003371_140 Hb_003371_140 Hb_001863_450--Hb_003371_140 Hb_033642_070 Hb_033642_070 Hb_001863_450--Hb_033642_070 Hb_008253_040 Hb_008253_040 Hb_001863_450--Hb_008253_040 Hb_000172_080 Hb_000172_080 Hb_001863_450--Hb_000172_080 Hb_004166_010--Hb_000172_080 Hb_000061_100 Hb_000061_100 Hb_004166_010--Hb_000061_100 Hb_004166_010--Hb_008253_040 Hb_004166_010--Hb_004466_070 Hb_002571_010 Hb_002571_010 Hb_004166_010--Hb_002571_010 Hb_006052_050 Hb_006052_050 Hb_002995_030--Hb_006052_050 Hb_126103_010 Hb_126103_010 Hb_002995_030--Hb_126103_010 Hb_001227_040 Hb_001227_040 Hb_002995_030--Hb_001227_040 Hb_002995_030--Hb_000333_120 Hb_010620_020 Hb_010620_020 Hb_002995_030--Hb_010620_020 Hb_012812_010 Hb_012812_010 Hb_001230_020--Hb_012812_010 Hb_072276_010 Hb_072276_010 Hb_001230_020--Hb_072276_010 Hb_001230_020--Hb_126103_010 Hb_000032_020 Hb_000032_020 Hb_001230_020--Hb_000032_020 Hb_001230_020--Hb_001195_730
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.80356 45.8691 5.58166 1.67042 0.0999639 1.20808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.46338 0.522855 0.0689719 7.62022 11.9622

CAGE analysis