Hb_000815_180

Information

Type -
Description -
Location Contig815: 221005-221241
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000815_180 0.0 - - -
2 Hb_156637_010 0.0076616761 - - PREDICTED: aldose reductase-like [Camelina sativa]
3 Hb_011549_020 0.0087812486 - - -
4 Hb_086063_030 0.0166942423 - - PREDICTED: pre-mRNA-processing-splicing factor 8-like [Camelina sativa]
5 Hb_007966_010 0.0174108844 - - carbohydrate binding protein, putative [Ricinus communis]
6 Hb_001740_020 0.0206914323 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
7 Hb_000266_090 0.0226203969 - - -
8 Hb_004785_110 0.0286080895 - - -
9 Hb_000603_060 0.0286491213 - - putative gag protein [Coffea canephora]
10 Hb_000473_130 0.0286589679 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
11 Hb_095589_010 0.0287836909 - - Ankyrin repeat family protein, putative [Theobroma cacao]
12 Hb_052135_040 0.0290516913 - - -
13 Hb_000963_100 0.0291133396 - - Protein SUA5, putative [Ricinus communis]
14 Hb_072376_010 0.0293932262 - - -
15 Hb_019429_010 0.0344274019 - - conserved hypothetical protein [Ricinus communis]
16 Hb_173479_010 0.0554624736 - - -
17 Hb_000083_030 0.0567739614 - - hypothetical protein JCGZ_24974 [Jatropha curcas]
18 Hb_001627_020 0.0595635866 - - -
19 Hb_003687_260 0.0677511904 - - PREDICTED: inorganic phosphate transporter 1-4-like [Camelina sativa]
20 Hb_002539_060 0.0687163111 - - -

Gene co-expression network

sample Hb_000815_180 Hb_000815_180 Hb_156637_010 Hb_156637_010 Hb_000815_180--Hb_156637_010 Hb_011549_020 Hb_011549_020 Hb_000815_180--Hb_011549_020 Hb_086063_030 Hb_086063_030 Hb_000815_180--Hb_086063_030 Hb_007966_010 Hb_007966_010 Hb_000815_180--Hb_007966_010 Hb_001740_020 Hb_001740_020 Hb_000815_180--Hb_001740_020 Hb_000266_090 Hb_000266_090 Hb_000815_180--Hb_000266_090 Hb_156637_010--Hb_011549_020 Hb_156637_010--Hb_086063_030 Hb_156637_010--Hb_007966_010 Hb_156637_010--Hb_001740_020 Hb_156637_010--Hb_000266_090 Hb_011549_020--Hb_086063_030 Hb_011549_020--Hb_007966_010 Hb_011549_020--Hb_001740_020 Hb_011549_020--Hb_000266_090 Hb_086063_030--Hb_007966_010 Hb_086063_030--Hb_001740_020 Hb_086063_030--Hb_000266_090 Hb_004785_110 Hb_004785_110 Hb_086063_030--Hb_004785_110 Hb_007966_010--Hb_001740_020 Hb_007966_010--Hb_000266_090 Hb_007966_010--Hb_004785_110 Hb_001740_020--Hb_000266_090 Hb_001740_020--Hb_004785_110 Hb_000603_060 Hb_000603_060 Hb_001740_020--Hb_000603_060 Hb_000473_130 Hb_000473_130 Hb_001740_020--Hb_000473_130 Hb_000266_090--Hb_004785_110 Hb_000266_090--Hb_000603_060 Hb_000266_090--Hb_000473_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.384685 0.395645 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis