Hb_000815_210

Information

Type -
Description -
Location Contig815: 229910-232483
Sequence    

Annotation

kegg
ID fve:101300529
description mitochondrial uncoupling protein 3-like
nr
ID AIU49799.1
description uncoupling protein 3, partial [Manihot esculenta]
swissprot
ID Q9XI74
description Mitochondrial uncoupling protein 3 OS=Arabidopsis thaliana GN=PUMP3 PE=2 SV=1
trembl
ID A0A097PP48
description Uncoupling protein 3 (Fragment) OS=Manihot esculenta PE=2 SV=1
Gene Ontology
ID GO:0016021
description uncoupling protein partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59363: 230102-232053
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000815_210 0.0 - - uncoupling protein 3, partial [Manihot esculenta]
2 Hb_000051_070 0.0658243457 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
3 Hb_000538_200 0.0689750775 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like [Jatropha curcas]
4 Hb_003406_010 0.0703640635 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
5 Hb_004600_040 0.0705781926 - - -
6 Hb_011673_030 0.07157866 - - hypothetical protein JCGZ_22219 [Jatropha curcas]
7 Hb_000608_030 0.0727037732 - - hypothetical protein JCGZ_18019 [Jatropha curcas]
8 Hb_001736_040 0.0753761897 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
9 Hb_000943_070 0.0784128047 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
10 Hb_002150_030 0.0804398115 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
11 Hb_003097_150 0.0814436162 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
12 Hb_005237_010 0.0831248513 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]
13 Hb_002609_110 0.0840387321 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
14 Hb_000392_300 0.0844316447 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
15 Hb_004724_200 0.0850735346 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
16 Hb_002477_030 0.0856085319 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105631404 isoform X1 [Jatropha curcas]
17 Hb_010710_110 0.0864153538 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
18 Hb_000300_060 0.0864367909 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
19 Hb_003005_020 0.0869510031 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
20 Hb_003506_080 0.0870344744 - - dipeptidyl peptidase IV, putative [Ricinus communis]

Gene co-expression network

sample Hb_000815_210 Hb_000815_210 Hb_000051_070 Hb_000051_070 Hb_000815_210--Hb_000051_070 Hb_000538_200 Hb_000538_200 Hb_000815_210--Hb_000538_200 Hb_003406_010 Hb_003406_010 Hb_000815_210--Hb_003406_010 Hb_004600_040 Hb_004600_040 Hb_000815_210--Hb_004600_040 Hb_011673_030 Hb_011673_030 Hb_000815_210--Hb_011673_030 Hb_000608_030 Hb_000608_030 Hb_000815_210--Hb_000608_030 Hb_001006_140 Hb_001006_140 Hb_000051_070--Hb_001006_140 Hb_000152_380 Hb_000152_380 Hb_000051_070--Hb_000152_380 Hb_005276_210 Hb_005276_210 Hb_000051_070--Hb_005276_210 Hb_001369_420 Hb_001369_420 Hb_000051_070--Hb_001369_420 Hb_003952_070 Hb_003952_070 Hb_000051_070--Hb_003952_070 Hb_000538_200--Hb_004600_040 Hb_001157_060 Hb_001157_060 Hb_000538_200--Hb_001157_060 Hb_001736_040 Hb_001736_040 Hb_000538_200--Hb_001736_040 Hb_000538_200--Hb_011673_030 Hb_000421_260 Hb_000421_260 Hb_000538_200--Hb_000421_260 Hb_000089_220 Hb_000089_220 Hb_003406_010--Hb_000089_220 Hb_002391_300 Hb_002391_300 Hb_003406_010--Hb_002391_300 Hb_005245_130 Hb_005245_130 Hb_003406_010--Hb_005245_130 Hb_004096_030 Hb_004096_030 Hb_003406_010--Hb_004096_030 Hb_007218_080 Hb_007218_080 Hb_003406_010--Hb_007218_080 Hb_000645_050 Hb_000645_050 Hb_003406_010--Hb_000645_050 Hb_002876_110 Hb_002876_110 Hb_004600_040--Hb_002876_110 Hb_000123_260 Hb_000123_260 Hb_004600_040--Hb_000123_260 Hb_004600_040--Hb_000421_260 Hb_003097_150 Hb_003097_150 Hb_004600_040--Hb_003097_150 Hb_000317_020 Hb_000317_020 Hb_004600_040--Hb_000317_020 Hb_003464_060 Hb_003464_060 Hb_011673_030--Hb_003464_060 Hb_001545_120 Hb_001545_120 Hb_011673_030--Hb_001545_120 Hb_011673_030--Hb_001006_140 Hb_002783_260 Hb_002783_260 Hb_011673_030--Hb_002783_260 Hb_011673_030--Hb_003406_010 Hb_000384_090 Hb_000384_090 Hb_000608_030--Hb_000384_090 Hb_003005_020 Hb_003005_020 Hb_000608_030--Hb_003005_020 Hb_000608_030--Hb_003406_010 Hb_000943_070 Hb_000943_070 Hb_000608_030--Hb_000943_070 Hb_003120_060 Hb_003120_060 Hb_000608_030--Hb_003120_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.88317 4.14451 2.36659 2.81143 10.3193 9.82147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.59414 6.4865 6.66389 2.86052 3.30214

CAGE analysis