Hb_000815_270

Information

Type -
Description -
Location Contig815: 272465-272997
Sequence    

Annotation

kegg
ID rcu:RCOM_0837630
description hypothetical protein
nr
ID XP_002522476.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S907
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0837630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000815_270 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009252_130 0.0890061231 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
3 Hb_000144_110 0.0938212544 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
4 Hb_000025_530 0.1113168925 - - PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]
5 Hb_000111_280 0.1147211025 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
6 Hb_009787_040 0.1152467707 desease resistance Gene Name: AAA_17 PREDICTED: uncharacterized protein LOC105135462 isoform X2 [Populus euphratica]
7 Hb_005590_020 0.1158624907 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
8 Hb_000134_330 0.1166837185 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
9 Hb_001616_020 0.1201450512 - - PREDICTED: wound-induced basic protein [Jatropha curcas]
10 Hb_005701_020 0.1214545572 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
11 Hb_010261_060 0.1222721669 - - unnamed protein product [Coffea canephora]
12 Hb_000563_240 0.1255001955 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
13 Hb_000648_060 0.1283650843 - - hypothetical protein POPTR_0019s10570g [Populus trichocarpa]
14 Hb_005694_080 0.1287491279 - - DNA-directed RNA polymerase III, putative [Ricinus communis]
15 Hb_002296_060 0.1299763347 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Fragaria vesca subsp. vesca]
16 Hb_002259_070 0.1309038777 - - taz protein, putative [Ricinus communis]
17 Hb_019253_030 0.1313974548 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3-like [Citrus sinensis]
18 Hb_000531_020 0.1316689694 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
19 Hb_000190_060 0.1318088928 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
20 Hb_000025_600 0.1322468043 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000815_270 Hb_000815_270 Hb_009252_130 Hb_009252_130 Hb_000815_270--Hb_009252_130 Hb_000144_110 Hb_000144_110 Hb_000815_270--Hb_000144_110 Hb_000025_530 Hb_000025_530 Hb_000815_270--Hb_000025_530 Hb_000111_280 Hb_000111_280 Hb_000815_270--Hb_000111_280 Hb_009787_040 Hb_009787_040 Hb_000815_270--Hb_009787_040 Hb_005590_020 Hb_005590_020 Hb_000815_270--Hb_005590_020 Hb_000190_060 Hb_000190_060 Hb_009252_130--Hb_000190_060 Hb_001616_020 Hb_001616_020 Hb_009252_130--Hb_001616_020 Hb_000563_590 Hb_000563_590 Hb_009252_130--Hb_000563_590 Hb_000061_480 Hb_000061_480 Hb_009252_130--Hb_000061_480 Hb_001621_180 Hb_001621_180 Hb_009252_130--Hb_001621_180 Hb_011609_180 Hb_011609_180 Hb_000144_110--Hb_011609_180 Hb_001045_080 Hb_001045_080 Hb_000144_110--Hb_001045_080 Hb_009851_100 Hb_009851_100 Hb_000144_110--Hb_009851_100 Hb_000025_600 Hb_000025_600 Hb_000144_110--Hb_000025_600 Hb_000144_110--Hb_009252_130 Hb_000531_020 Hb_000531_020 Hb_000025_530--Hb_000531_020 Hb_000260_080 Hb_000260_080 Hb_000025_530--Hb_000260_080 Hb_002893_060 Hb_002893_060 Hb_000025_530--Hb_002893_060 Hb_000703_140 Hb_000703_140 Hb_000025_530--Hb_000703_140 Hb_000970_010 Hb_000970_010 Hb_000025_530--Hb_000970_010 Hb_002477_240 Hb_002477_240 Hb_000025_530--Hb_002477_240 Hb_000648_060 Hb_000648_060 Hb_000111_280--Hb_000648_060 Hb_183963_020 Hb_183963_020 Hb_000111_280--Hb_183963_020 Hb_005694_080 Hb_005694_080 Hb_000111_280--Hb_005694_080 Hb_007021_020 Hb_007021_020 Hb_000111_280--Hb_007021_020 Hb_000111_280--Hb_009252_130 Hb_000567_170 Hb_000567_170 Hb_000111_280--Hb_000567_170 Hb_000099_060 Hb_000099_060 Hb_009787_040--Hb_000099_060 Hb_009787_040--Hb_000970_010 Hb_000563_240 Hb_000563_240 Hb_009787_040--Hb_000563_240 Hb_019253_030 Hb_019253_030 Hb_009787_040--Hb_019253_030 Hb_155764_020 Hb_155764_020 Hb_009787_040--Hb_155764_020 Hb_009787_040--Hb_005590_020 Hb_010672_070 Hb_010672_070 Hb_005590_020--Hb_010672_070 Hb_076626_010 Hb_076626_010 Hb_005590_020--Hb_076626_010 Hb_007944_040 Hb_007944_040 Hb_005590_020--Hb_007944_040 Hb_001268_140 Hb_001268_140 Hb_005590_020--Hb_001268_140 Hb_002999_050 Hb_002999_050 Hb_005590_020--Hb_002999_050 Hb_000212_260 Hb_000212_260 Hb_005590_020--Hb_000212_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.89148 0.657527 2.20554 0.425303 4.49279 3.47178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.54437 16.189 6.45569 2.14183 1.0173

CAGE analysis