Hb_000816_090

Information

Type transcription factor
Description TF Family: TRAF
Location Contig816: 74393-76038
Sequence    

Annotation

kegg
ID rcu:RCOM_0688750
description protein binding protein, putative
nr
ID XP_002520826.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q9LYL9
description BTB/POZ domain-containing protein At3g56230 OS=Arabidopsis thaliana GN=At3g56230 PE=2 SV=1
trembl
ID B9S4A7
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0688750 PE=4 SV=1
Gene Ontology
ID GO:0010413
description btb poz domain-containing protein at3g56230-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59406: 74194-75124
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000816_090 0.0 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
2 Hb_003060_020 0.0401616678 - - serine carboxypeptidase, putative [Ricinus communis]
3 Hb_000327_350 0.0459862724 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
4 Hb_006570_170 0.0521025412 - - Gibberellin-regulated protein 1 precursor, putative [Ricinus communis]
5 Hb_005396_020 0.0536842909 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
6 Hb_003528_090 0.0639292655 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
7 Hb_001634_050 0.0647278088 - - PREDICTED: fasciclin-like arabinogalactan protein 12 [Jatropha curcas]
8 Hb_000318_500 0.0695971423 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006249_010 0.0743320509 - - hypothetical protein JCGZ_13152 [Jatropha curcas]
10 Hb_012180_070 0.0757717555 - - conserved hypothetical protein [Ricinus communis]
11 Hb_022250_140 0.0764944677 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
12 Hb_000244_290 0.077801761 - - PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [Jatropha curcas]
13 Hb_000628_070 0.0782726391 - - -
14 Hb_000521_030 0.0794178369 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]
15 Hb_001157_120 0.0812080917 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
16 Hb_006816_060 0.0837802906 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
17 Hb_103468_010 0.0847032837 - - protein binding protein, putative [Ricinus communis]
18 Hb_011344_110 0.0850038478 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
19 Hb_001401_130 0.0850040857 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
20 Hb_001712_010 0.0873685564 - - PREDICTED: phosphate transporter PHO1 homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000816_090 Hb_000816_090 Hb_003060_020 Hb_003060_020 Hb_000816_090--Hb_003060_020 Hb_000327_350 Hb_000327_350 Hb_000816_090--Hb_000327_350 Hb_006570_170 Hb_006570_170 Hb_000816_090--Hb_006570_170 Hb_005396_020 Hb_005396_020 Hb_000816_090--Hb_005396_020 Hb_003528_090 Hb_003528_090 Hb_000816_090--Hb_003528_090 Hb_001634_050 Hb_001634_050 Hb_000816_090--Hb_001634_050 Hb_003060_020--Hb_003528_090 Hb_003060_020--Hb_000327_350 Hb_003060_020--Hb_005396_020 Hb_103468_010 Hb_103468_010 Hb_003060_020--Hb_103468_010 Hb_003060_020--Hb_001634_050 Hb_000521_030 Hb_000521_030 Hb_000327_350--Hb_000521_030 Hb_000327_350--Hb_003528_090 Hb_000318_500 Hb_000318_500 Hb_000327_350--Hb_000318_500 Hb_000244_290 Hb_000244_290 Hb_000327_350--Hb_000244_290 Hb_006570_170--Hb_001634_050 Hb_022250_140 Hb_022250_140 Hb_006570_170--Hb_022250_140 Hb_006570_170--Hb_005396_020 Hb_006249_010 Hb_006249_010 Hb_006570_170--Hb_006249_010 Hb_012180_070 Hb_012180_070 Hb_006570_170--Hb_012180_070 Hb_005396_020--Hb_001634_050 Hb_005396_020--Hb_012180_070 Hb_005396_020--Hb_003528_090 Hb_001157_120 Hb_001157_120 Hb_003528_090--Hb_001157_120 Hb_001401_130 Hb_001401_130 Hb_003528_090--Hb_001401_130 Hb_001634_050--Hb_012180_070 Hb_000107_240 Hb_000107_240 Hb_001634_050--Hb_000107_240 Hb_001634_050--Hb_006249_010 Hb_001634_050--Hb_022250_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.321206 0.420514 12.437 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0335824 1.41982

CAGE analysis