Hb_000816_110

Information

Type -
Description -
Location Contig816: 95940-97374
Sequence    

Annotation

kegg
ID rcu:RCOM_0688770
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012091194.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
swissprot
ID O64766
description Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1
trembl
ID A0A067JCX8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03357 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000816_110 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
2 Hb_075812_010 0.1475547562 - - hypothetical protein POPTR_0005s04330g [Populus trichocarpa]
3 Hb_004223_230 0.1551026299 transcription factor TF Family: ARF PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
4 Hb_003777_070 0.1706593107 - - -
5 Hb_138413_010 0.1800782469 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
6 Hb_005730_020 0.1803509973 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
7 Hb_010098_080 0.1857013527 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]
8 Hb_003327_060 0.1873770815 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
9 Hb_014067_010 0.1891150066 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
10 Hb_000117_040 0.1897385897 - - 30S ribosomal protein S6A [Hevea brasiliensis]
11 Hb_003507_020 0.1898995016 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
12 Hb_102864_010 0.19080564 - - hypothetical protein POPTR_0008s14250g [Populus trichocarpa]
13 Hb_000789_190 0.1909745104 transcription factor TF Family: NAC hypothetical protein JCGZ_07342 [Jatropha curcas]
14 Hb_002301_320 0.1938758273 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
15 Hb_030620_010 0.1945498399 - - -
16 Hb_000951_060 0.1984384045 - - mads box protein, putative [Ricinus communis]
17 Hb_000193_230 0.2004473053 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
18 Hb_002843_160 0.2015091111 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Jatropha curcas]
19 Hb_000853_370 0.2023198094 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
20 Hb_000914_060 0.2031162655 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]

Gene co-expression network

sample Hb_000816_110 Hb_000816_110 Hb_075812_010 Hb_075812_010 Hb_000816_110--Hb_075812_010 Hb_004223_230 Hb_004223_230 Hb_000816_110--Hb_004223_230 Hb_003777_070 Hb_003777_070 Hb_000816_110--Hb_003777_070 Hb_138413_010 Hb_138413_010 Hb_000816_110--Hb_138413_010 Hb_005730_020 Hb_005730_020 Hb_000816_110--Hb_005730_020 Hb_010098_080 Hb_010098_080 Hb_000816_110--Hb_010098_080 Hb_000853_370 Hb_000853_370 Hb_075812_010--Hb_000853_370 Hb_000926_270 Hb_000926_270 Hb_075812_010--Hb_000926_270 Hb_000117_040 Hb_000117_040 Hb_075812_010--Hb_000117_040 Hb_075812_010--Hb_004223_230 Hb_004295_020 Hb_004295_020 Hb_075812_010--Hb_004295_020 Hb_050964_020 Hb_050964_020 Hb_075812_010--Hb_050964_020 Hb_005031_070 Hb_005031_070 Hb_004223_230--Hb_005031_070 Hb_004223_230--Hb_004295_020 Hb_030620_010 Hb_030620_010 Hb_004223_230--Hb_030620_010 Hb_004223_230--Hb_000117_040 Hb_102864_010 Hb_102864_010 Hb_004223_230--Hb_102864_010 Hb_000313_380 Hb_000313_380 Hb_004223_230--Hb_000313_380 Hb_003253_010 Hb_003253_010 Hb_003777_070--Hb_003253_010 Hb_003777_070--Hb_010098_080 Hb_001980_020 Hb_001980_020 Hb_003777_070--Hb_001980_020 Hb_000038_130 Hb_000038_130 Hb_003777_070--Hb_000038_130 Hb_000352_150 Hb_000352_150 Hb_003777_070--Hb_000352_150 Hb_007810_050 Hb_007810_050 Hb_003777_070--Hb_007810_050 Hb_003327_060 Hb_003327_060 Hb_138413_010--Hb_003327_060 Hb_014067_010 Hb_014067_010 Hb_138413_010--Hb_014067_010 Hb_000933_140 Hb_000933_140 Hb_138413_010--Hb_000933_140 Hb_026048_090 Hb_026048_090 Hb_138413_010--Hb_026048_090 Hb_003627_020 Hb_003627_020 Hb_138413_010--Hb_003627_020 Hb_002067_160 Hb_002067_160 Hb_138413_010--Hb_002067_160 Hb_002609_260 Hb_002609_260 Hb_005730_020--Hb_002609_260 Hb_000264_190 Hb_000264_190 Hb_005730_020--Hb_000264_190 Hb_009510_030 Hb_009510_030 Hb_005730_020--Hb_009510_030 Hb_003001_030 Hb_003001_030 Hb_005730_020--Hb_003001_030 Hb_010931_100 Hb_010931_100 Hb_005730_020--Hb_010931_100 Hb_000563_540 Hb_000563_540 Hb_005730_020--Hb_000563_540 Hb_010098_080--Hb_003253_010 Hb_000500_310 Hb_000500_310 Hb_010098_080--Hb_000500_310 Hb_003018_180 Hb_003018_180 Hb_010098_080--Hb_003018_180 Hb_002298_040 Hb_002298_040 Hb_010098_080--Hb_002298_040 Hb_010098_080--Hb_002609_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.114987 0.0200353 0 0 0.0763318 0.0919873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0457734 0.10801 0.06661 0 0

CAGE analysis