Hb_000816_120

Information

Type -
Description -
Location Contig816: 97630-98291
Sequence    

Annotation

kegg
ID rcu:RCOM_0688780
description hypothetical protein
nr
ID XP_012091193.1
description PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNW4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03356 PE=4 SV=1
Gene Ontology
ID GO:0016021
description hypoxia-responsive family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000816_120 0.0 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
2 Hb_001190_060 0.1455422337 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
3 Hb_003096_050 0.169175363 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000758_040 0.2154462885 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098 [Jatropha curcas]
5 Hb_000056_330 0.2171208659 - - unnamed protein product [Vitis vinifera]
6 Hb_000213_130 0.2216748991 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
7 Hb_010647_010 0.2296537023 - - PREDICTED: protein NP24-like [Eucalyptus grandis]
8 Hb_002311_240 0.2370504271 - - hypothetical protein JCGZ_18937 [Jatropha curcas]
9 Hb_007520_040 0.2388178718 - - PREDICTED: carbonic anhydrase 2-like [Jatropha curcas]
10 Hb_006355_030 0.2405936403 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]
11 Hb_000926_130 0.2421457343 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_007072_020 0.2439591693 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
13 Hb_007894_250 0.2493214889 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
14 Hb_000445_450 0.2500174362 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
15 Hb_002161_020 0.2591501169 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
16 Hb_000140_160 0.262313142 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
17 Hb_000500_110 0.2624730353 - - Blue copper protein precursor, putative [Ricinus communis]
18 Hb_000466_150 0.2659236882 - - hypothetical protein JCGZ_02123 [Jatropha curcas]
19 Hb_000019_220 0.2662455379 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
20 Hb_002918_230 0.271182768 - - PREDICTED: probable glutathione S-transferase [Gossypium raimondii]

Gene co-expression network

sample Hb_000816_120 Hb_000816_120 Hb_001190_060 Hb_001190_060 Hb_000816_120--Hb_001190_060 Hb_003096_050 Hb_003096_050 Hb_000816_120--Hb_003096_050 Hb_000758_040 Hb_000758_040 Hb_000816_120--Hb_000758_040 Hb_000056_330 Hb_000056_330 Hb_000816_120--Hb_000056_330 Hb_000213_130 Hb_000213_130 Hb_000816_120--Hb_000213_130 Hb_010647_010 Hb_010647_010 Hb_000816_120--Hb_010647_010 Hb_001190_060--Hb_003096_050 Hb_001190_060--Hb_000056_330 Hb_003992_250 Hb_003992_250 Hb_001190_060--Hb_003992_250 Hb_000140_160 Hb_000140_160 Hb_001190_060--Hb_000140_160 Hb_002311_240 Hb_002311_240 Hb_001190_060--Hb_002311_240 Hb_003096_050--Hb_000056_330 Hb_007894_250 Hb_007894_250 Hb_003096_050--Hb_007894_250 Hb_003096_050--Hb_002311_240 Hb_000975_150 Hb_000975_150 Hb_003096_050--Hb_000975_150 Hb_113250_010 Hb_113250_010 Hb_000758_040--Hb_113250_010 Hb_000758_040--Hb_001190_060 Hb_000011_430 Hb_000011_430 Hb_000758_040--Hb_000011_430 Hb_000758_040--Hb_003096_050 Hb_000758_040--Hb_000975_150 Hb_000926_130 Hb_000926_130 Hb_000056_330--Hb_000926_130 Hb_000056_330--Hb_007894_250 Hb_007072_020 Hb_007072_020 Hb_000056_330--Hb_007072_020 Hb_000056_330--Hb_000975_150 Hb_012506_080 Hb_012506_080 Hb_000213_130--Hb_012506_080 Hb_004267_050 Hb_004267_050 Hb_000213_130--Hb_004267_050 Hb_022250_050 Hb_022250_050 Hb_000213_130--Hb_022250_050 Hb_001140_330 Hb_001140_330 Hb_000213_130--Hb_001140_330 Hb_005120_010 Hb_005120_010 Hb_000213_130--Hb_005120_010 Hb_001040_190 Hb_001040_190 Hb_000213_130--Hb_001040_190 Hb_010647_010--Hb_002311_240 Hb_000019_220 Hb_000019_220 Hb_010647_010--Hb_000019_220 Hb_012707_050 Hb_012707_050 Hb_010647_010--Hb_012707_050 Hb_001250_140 Hb_001250_140 Hb_010647_010--Hb_001250_140 Hb_073171_020 Hb_073171_020 Hb_010647_010--Hb_073171_020 Hb_010647_010--Hb_000213_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.65498 0 0.389741 0.528693 0.114835 0.77951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.43337 4.49776 0.566781 43.1702 0

CAGE analysis