Hb_000816_200

Information

Type -
Description -
Location Contig816: 210115-217121
Sequence    

Annotation

kegg
ID rcu:RCOM_0689400
description 2-deoxyglucose-6-phosphate phosphatase, putative
nr
ID XP_002520841.1
description 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S4C2
description 2-deoxyglucose-6-phosphate phosphatase, putative OS=Ricinus communis GN=RCOM_0689400 PE=4 SV=1
Gene Ontology
ID GO:0016787
description haloacid dehalogenase-like hydrolase superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59420: 206445-209238 , PASA_asmbl_59421: 210078-217190
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000816_200 0.0 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
2 Hb_016461_030 0.067480831 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_001195_770 0.0688832009 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
4 Hb_003124_120 0.069501612 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
5 Hb_029920_030 0.0723009119 - - PREDICTED: 2-Cys peroxiredoxin BAS1, chloroplastic-like [Jatropha curcas]
6 Hb_000189_450 0.073528361 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
7 Hb_007441_310 0.0772194184 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
8 Hb_000114_150 0.0790049291 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
9 Hb_000983_070 0.0823238564 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001677_220 0.085105545 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]
11 Hb_002075_030 0.0876825758 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
12 Hb_000480_040 0.0880298044 - - PREDICTED: L-Ala-D/L-amino acid epimerase isoform X2 [Jatropha curcas]
13 Hb_000059_270 0.0903424805 - - superoxide dismutase [Fe], chloroplastic [Jatropha curcas]
14 Hb_008375_010 0.0911543001 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
15 Hb_005276_010 0.0917738593 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
16 Hb_000941_100 0.0948418988 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
17 Hb_010128_020 0.0955187388 - - hypothetical protein POPTR_0001s24210g [Populus trichocarpa]
18 Hb_000032_500 0.0964663667 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
19 Hb_002053_010 0.0978556725 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
20 Hb_003171_030 0.0993115043 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000816_200 Hb_000816_200 Hb_016461_030 Hb_016461_030 Hb_000816_200--Hb_016461_030 Hb_001195_770 Hb_001195_770 Hb_000816_200--Hb_001195_770 Hb_003124_120 Hb_003124_120 Hb_000816_200--Hb_003124_120 Hb_029920_030 Hb_029920_030 Hb_000816_200--Hb_029920_030 Hb_000189_450 Hb_000189_450 Hb_000816_200--Hb_000189_450 Hb_007441_310 Hb_007441_310 Hb_000816_200--Hb_007441_310 Hb_002282_070 Hb_002282_070 Hb_016461_030--Hb_002282_070 Hb_000345_370 Hb_000345_370 Hb_016461_030--Hb_000345_370 Hb_003777_020 Hb_003777_020 Hb_016461_030--Hb_003777_020 Hb_002542_160 Hb_002542_160 Hb_016461_030--Hb_002542_160 Hb_001427_040 Hb_001427_040 Hb_016461_030--Hb_001427_040 Hb_008705_020 Hb_008705_020 Hb_001195_770--Hb_008705_020 Hb_003053_110 Hb_003053_110 Hb_001195_770--Hb_003053_110 Hb_000941_100 Hb_000941_100 Hb_001195_770--Hb_000941_100 Hb_006907_060 Hb_006907_060 Hb_001195_770--Hb_006907_060 Hb_002762_110 Hb_002762_110 Hb_001195_770--Hb_002762_110 Hb_010128_020 Hb_010128_020 Hb_003124_120--Hb_010128_020 Hb_003124_120--Hb_016461_030 Hb_001677_220 Hb_001677_220 Hb_003124_120--Hb_001677_220 Hb_000983_070 Hb_000983_070 Hb_003124_120--Hb_000983_070 Hb_002075_030 Hb_002075_030 Hb_003124_120--Hb_002075_030 Hb_029920_030--Hb_016461_030 Hb_029920_030--Hb_001195_770 Hb_005276_010 Hb_005276_010 Hb_029920_030--Hb_005276_010 Hb_000480_040 Hb_000480_040 Hb_029920_030--Hb_000480_040 Hb_000164_140 Hb_000164_140 Hb_029920_030--Hb_000164_140 Hb_000189_450--Hb_001677_220 Hb_016219_030 Hb_016219_030 Hb_000189_450--Hb_016219_030 Hb_003142_010 Hb_003142_010 Hb_000189_450--Hb_003142_010 Hb_001080_070 Hb_001080_070 Hb_000189_450--Hb_001080_070 Hb_000114_150 Hb_000114_150 Hb_000189_450--Hb_000114_150 Hb_008375_010 Hb_008375_010 Hb_007441_310--Hb_008375_010 Hb_032631_070 Hb_032631_070 Hb_007441_310--Hb_032631_070 Hb_000585_110 Hb_000585_110 Hb_007441_310--Hb_000585_110 Hb_000397_150 Hb_000397_150 Hb_007441_310--Hb_000397_150 Hb_055690_010 Hb_055690_010 Hb_007441_310--Hb_055690_010 Hb_007441_310--Hb_001195_770
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.55033 4.22902 14.3276 11.8664 3.98453 4.95072
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.00556 6.97664 5.69112 7.0719 31.7278

CAGE analysis