Hb_000816_210

Information

Type -
Description -
Location Contig816: 218165-221532
Sequence    

Annotation

kegg
ID rcu:RCOM_0689410
description uroporphyrinogen decarboxylase, putative (EC:4.1.1.37)
nr
ID XP_012091178.1
description PREDICTED: uroporphyrinogen decarboxylase isoform X2 [Jatropha curcas]
swissprot
ID Q42967
description Uroporphyrinogen decarboxylase, chloroplastic OS=Nicotiana tabacum GN=DCUP PE=1 SV=1
trembl
ID A0A067JNV3
description Uroporphyrinogen decarboxylase OS=Jatropha curcas GN=JCGZ_03346 PE=3 SV=1
Gene Ontology
ID GO:0009570
description uroporphyrinogen decarboxylase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59421: 210078-217190 , PASA_asmbl_59422: 218160-221854
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000816_210 0.0 - - PREDICTED: uroporphyrinogen decarboxylase isoform X2 [Jatropha curcas]
2 Hb_000207_140 0.1243226774 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
3 Hb_002435_090 0.1363897709 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
4 Hb_001975_050 0.1367814122 - - Tyrosine-specific transport protein, putative [Ricinus communis]
5 Hb_000438_130 0.1395205587 - - uroporphyrinogen decarboxylase, putative [Ricinus communis]
6 Hb_188739_010 0.1557926908 - - protein binding protein, putative [Ricinus communis]
7 Hb_003430_040 0.1559096295 - - spermidine synthase 1, putative [Ricinus communis]
8 Hb_000300_710 0.1579762047 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
9 Hb_003992_050 0.1580663391 - - delta 9 desaturase, putative [Ricinus communis]
10 Hb_000638_260 0.1608234298 - - hypothetical protein JCGZ_06730 [Jatropha curcas]
11 Hb_007336_050 0.1609598558 - - PREDICTED: uncharacterized protein LOC105630915 [Jatropha curcas]
12 Hb_000347_140 0.1642736802 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_074792_010 0.1658579504 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
14 Hb_002603_090 0.1670350891 - - PREDICTED: GDSL esterase/lipase CPRD49-like isoform X2 [Populus euphratica]
15 Hb_001343_120 0.1698678598 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006618_070 0.1712477858 - - PREDICTED: uncharacterized protein LOC105645975 isoform X1 [Jatropha curcas]
17 Hb_000392_450 0.1715410956 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
18 Hb_004517_030 0.1734146654 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000169_070 0.1758969623 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
20 Hb_001386_090 0.1766642013 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]

Gene co-expression network

sample Hb_000816_210 Hb_000816_210 Hb_000207_140 Hb_000207_140 Hb_000816_210--Hb_000207_140 Hb_002435_090 Hb_002435_090 Hb_000816_210--Hb_002435_090 Hb_001975_050 Hb_001975_050 Hb_000816_210--Hb_001975_050 Hb_000438_130 Hb_000438_130 Hb_000816_210--Hb_000438_130 Hb_188739_010 Hb_188739_010 Hb_000816_210--Hb_188739_010 Hb_003430_040 Hb_003430_040 Hb_000816_210--Hb_003430_040 Hb_000207_140--Hb_002435_090 Hb_000207_140--Hb_188739_010 Hb_001343_120 Hb_001343_120 Hb_000207_140--Hb_001343_120 Hb_003992_050 Hb_003992_050 Hb_000207_140--Hb_003992_050 Hb_000207_140--Hb_001975_050 Hb_002435_090--Hb_188739_010 Hb_002435_090--Hb_001343_120 Hb_002435_090--Hb_003992_050 Hb_002435_090--Hb_001975_050 Hb_140360_010 Hb_140360_010 Hb_002435_090--Hb_140360_010 Hb_001975_050--Hb_188739_010 Hb_000637_070 Hb_000637_070 Hb_001975_050--Hb_000637_070 Hb_001975_050--Hb_001343_120 Hb_001975_050--Hb_003992_050 Hb_027654_070 Hb_027654_070 Hb_001975_050--Hb_027654_070 Hb_001386_090 Hb_001386_090 Hb_000438_130--Hb_001386_090 Hb_000392_450 Hb_000392_450 Hb_000438_130--Hb_000392_450 Hb_001711_060 Hb_001711_060 Hb_000438_130--Hb_001711_060 Hb_002027_320 Hb_002027_320 Hb_000438_130--Hb_002027_320 Hb_012653_030 Hb_012653_030 Hb_000438_130--Hb_012653_030 Hb_003397_030 Hb_003397_030 Hb_000438_130--Hb_003397_030 Hb_000347_140 Hb_000347_140 Hb_188739_010--Hb_000347_140 Hb_000300_710 Hb_000300_710 Hb_188739_010--Hb_000300_710 Hb_188739_010--Hb_001343_120 Hb_074792_010 Hb_074792_010 Hb_003430_040--Hb_074792_010 Hb_003430_040--Hb_000347_140 Hb_003874_010 Hb_003874_010 Hb_003430_040--Hb_003874_010 Hb_000732_030 Hb_000732_030 Hb_003430_040--Hb_000732_030 Hb_000032_200 Hb_000032_200 Hb_003430_040--Hb_000032_200 Hb_003430_040--Hb_000300_710
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2787 5.05617 107.068 10.7756 8.47188 11.9291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.41901 3.05001 3.79718 4.68285 26.2002

CAGE analysis