Hb_000816_260

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig816: 254481-262882
Sequence    

Annotation

kegg
ID rcu:RCOM_0687360
description leucine-rich repeat-containing protein 2, lrrc2, putative (EC:3.1.3.16)
nr
ID XP_012090562.1
description PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067LBZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01203 PE=4 SV=1
Gene Ontology
ID GO:0000166
description cc-nbs-lrr resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000816_260 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
2 Hb_003124_030 0.1803133181 - - At4g33625-like protein [Brassica napus]
3 Hb_063943_010 0.1896304984 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
4 Hb_167103_010 0.1965871165 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
5 Hb_000103_570 0.1977494013 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic [Jatropha curcas]
6 Hb_006905_030 0.197948711 - - -
7 Hb_000455_130 0.2009277563 - - PREDICTED: aspartic proteinase A1-like isoform X1 [Jatropha curcas]
8 Hb_005601_020 0.2028709608 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
9 Hb_000618_090 0.2036678829 - - -
10 Hb_163256_010 0.2078360154 - - PREDICTED: phosphoglucomutase, chloroplastic [Jatropha curcas]
11 Hb_000008_410 0.2085419791 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
12 Hb_007035_040 0.2089615888 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
13 Hb_003059_010 0.2104774594 - - PREDICTED: uncharacterized protein LOC104236538 [Nicotiana sylvestris]
14 Hb_098315_090 0.2117072368 - - Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
15 Hb_027402_130 0.2123413258 - - malate dehydrogenase, putative [Ricinus communis]
16 Hb_001172_140 0.2128078205 - - hypothetical protein POPTR_0014s17790g [Populus trichocarpa]
17 Hb_000181_100 0.213056099 - - PREDICTED: protein starmaker [Jatropha curcas]
18 Hb_001266_120 0.2135422288 - - auxilin, putative [Ricinus communis]
19 Hb_004800_180 0.2168544629 - - PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [Populus euphratica]
20 Hb_003266_020 0.2179216623 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]

Gene co-expression network

sample Hb_000816_260 Hb_000816_260 Hb_003124_030 Hb_003124_030 Hb_000816_260--Hb_003124_030 Hb_063943_010 Hb_063943_010 Hb_000816_260--Hb_063943_010 Hb_167103_010 Hb_167103_010 Hb_000816_260--Hb_167103_010 Hb_000103_570 Hb_000103_570 Hb_000816_260--Hb_000103_570 Hb_006905_030 Hb_006905_030 Hb_000816_260--Hb_006905_030 Hb_000455_130 Hb_000455_130 Hb_000816_260--Hb_000455_130 Hb_156850_090 Hb_156850_090 Hb_003124_030--Hb_156850_090 Hb_000562_050 Hb_000562_050 Hb_003124_030--Hb_000562_050 Hb_001008_050 Hb_001008_050 Hb_003124_030--Hb_001008_050 Hb_158092_080 Hb_158092_080 Hb_003124_030--Hb_158092_080 Hb_001789_020 Hb_001789_020 Hb_003124_030--Hb_001789_020 Hb_001085_290 Hb_001085_290 Hb_003124_030--Hb_001085_290 Hb_146339_010 Hb_146339_010 Hb_063943_010--Hb_146339_010 Hb_003059_010 Hb_003059_010 Hb_063943_010--Hb_003059_010 Hb_089206_010 Hb_089206_010 Hb_063943_010--Hb_089206_010 Hb_003175_110 Hb_003175_110 Hb_063943_010--Hb_003175_110 Hb_183443_010 Hb_183443_010 Hb_063943_010--Hb_183443_010 Hb_063943_010--Hb_003124_030 Hb_000529_180 Hb_000529_180 Hb_167103_010--Hb_000529_180 Hb_000613_120 Hb_000613_120 Hb_167103_010--Hb_000613_120 Hb_001438_010 Hb_001438_010 Hb_167103_010--Hb_001438_010 Hb_004109_260 Hb_004109_260 Hb_167103_010--Hb_004109_260 Hb_002660_190 Hb_002660_190 Hb_167103_010--Hb_002660_190 Hb_167103_010--Hb_006905_030 Hb_004800_180 Hb_004800_180 Hb_000103_570--Hb_004800_180 Hb_001221_180 Hb_001221_180 Hb_000103_570--Hb_001221_180 Hb_004064_050 Hb_004064_050 Hb_000103_570--Hb_004064_050 Hb_000181_100 Hb_000181_100 Hb_000103_570--Hb_000181_100 Hb_001723_140 Hb_001723_140 Hb_000103_570--Hb_001723_140 Hb_000523_080 Hb_000523_080 Hb_000103_570--Hb_000523_080 Hb_006573_150 Hb_006573_150 Hb_006905_030--Hb_006573_150 Hb_005601_020 Hb_005601_020 Hb_006905_030--Hb_005601_020 Hb_001981_040 Hb_001981_040 Hb_006905_030--Hb_001981_040 Hb_000062_510 Hb_000062_510 Hb_006905_030--Hb_000062_510 Hb_114893_040 Hb_114893_040 Hb_006905_030--Hb_114893_040 Hb_019840_030 Hb_019840_030 Hb_000455_130--Hb_019840_030 Hb_000321_090 Hb_000321_090 Hb_000455_130--Hb_000321_090 Hb_006478_030 Hb_006478_030 Hb_000455_130--Hb_006478_030 Hb_000455_130--Hb_001221_180 Hb_007747_170 Hb_007747_170 Hb_000455_130--Hb_007747_170 Hb_080147_050 Hb_080147_050 Hb_000455_130--Hb_080147_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0537491 0.0325699 0.0775633 0.022775 0.0374912 0.0170624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0144702 0 0.0435663 0.0812934 0.0971848

CAGE analysis