Hb_000817_030

Information

Type -
Description -
Location Contig817: 33282-40281
Sequence    

Annotation

kegg
ID rcu:RCOM_0865750
description mak, putative (EC:2.7.11.23)
nr
ID XP_002519870.1
description mak, putative [Ricinus communis]
swissprot
ID Q6Z8C8
description Cyclin-dependent kinase F-4 OS=Oryza sativa subsp. japonica GN=CDKF-4 PE=2 SV=1
trembl
ID B9S1K5
description Mak, putative OS=Ricinus communis GN=RCOM_0865750 PE=4 SV=1
Gene Ontology
ID GO:0005524
description cyclin-dependent kinase f-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59456: 33466-40269 , PASA_asmbl_59457: 38069-40269 , PASA_asmbl_59458: 38077-38697
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000817_030 0.0 - - mak, putative [Ricinus communis]
2 Hb_027625_010 0.0606505754 - - PREDICTED: protein sym-1-like [Jatropha curcas]
3 Hb_002742_090 0.0671827134 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
4 Hb_005463_140 0.0776738398 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
5 Hb_005883_100 0.0783588122 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
6 Hb_001519_030 0.0798046774 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
7 Hb_017948_010 0.0805863661 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
8 Hb_001191_090 0.0881662162 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
9 Hb_012490_050 0.0883929259 - - PREDICTED: uncharacterized protein LOC105637921 [Jatropha curcas]
10 Hb_000173_220 0.0892599097 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
11 Hb_011644_030 0.0894827357 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
12 Hb_000069_550 0.0903399992 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
13 Hb_005568_120 0.0911159984 - - Prephenate dehydratase [Hevea brasiliensis]
14 Hb_000441_190 0.0916011672 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
15 Hb_001481_140 0.0925415401 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
16 Hb_068056_030 0.0927716409 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
17 Hb_006569_100 0.0929178 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
18 Hb_000985_060 0.0931032217 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
19 Hb_000108_190 0.0933787211 - - PREDICTED: dihydroorotate dehydrogenase (quinone), mitochondrial [Jatropha curcas]
20 Hb_028515_010 0.0936333451 - - PREDICTED: protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000817_030 Hb_000817_030 Hb_027625_010 Hb_027625_010 Hb_000817_030--Hb_027625_010 Hb_002742_090 Hb_002742_090 Hb_000817_030--Hb_002742_090 Hb_005463_140 Hb_005463_140 Hb_000817_030--Hb_005463_140 Hb_005883_100 Hb_005883_100 Hb_000817_030--Hb_005883_100 Hb_001519_030 Hb_001519_030 Hb_000817_030--Hb_001519_030 Hb_017948_010 Hb_017948_010 Hb_000817_030--Hb_017948_010 Hb_000046_290 Hb_000046_290 Hb_027625_010--Hb_000046_290 Hb_011644_030 Hb_011644_030 Hb_027625_010--Hb_011644_030 Hb_000230_510 Hb_000230_510 Hb_027625_010--Hb_000230_510 Hb_011537_110 Hb_011537_110 Hb_027625_010--Hb_011537_110 Hb_000072_180 Hb_000072_180 Hb_027625_010--Hb_000072_180 Hb_001776_160 Hb_001776_160 Hb_002742_090--Hb_001776_160 Hb_000120_020 Hb_000120_020 Hb_002742_090--Hb_000120_020 Hb_028515_010 Hb_028515_010 Hb_002742_090--Hb_028515_010 Hb_002110_200 Hb_002110_200 Hb_002742_090--Hb_002110_200 Hb_068056_030 Hb_068056_030 Hb_002742_090--Hb_068056_030 Hb_072922_020 Hb_072922_020 Hb_005463_140--Hb_072922_020 Hb_000224_140 Hb_000224_140 Hb_005463_140--Hb_000224_140 Hb_001155_040 Hb_001155_040 Hb_005463_140--Hb_001155_040 Hb_005463_140--Hb_068056_030 Hb_001512_080 Hb_001512_080 Hb_005463_140--Hb_001512_080 Hb_000302_280 Hb_000302_280 Hb_005463_140--Hb_000302_280 Hb_005568_120 Hb_005568_120 Hb_005883_100--Hb_005568_120 Hb_012675_060 Hb_012675_060 Hb_005883_100--Hb_012675_060 Hb_001998_050 Hb_001998_050 Hb_005883_100--Hb_001998_050 Hb_001085_120 Hb_001085_120 Hb_005883_100--Hb_001085_120 Hb_004567_120 Hb_004567_120 Hb_005883_100--Hb_004567_120 Hb_001481_140 Hb_001481_140 Hb_001519_030--Hb_001481_140 Hb_006569_100 Hb_006569_100 Hb_001519_030--Hb_006569_100 Hb_001005_080 Hb_001005_080 Hb_001519_030--Hb_001005_080 Hb_005527_040 Hb_005527_040 Hb_001519_030--Hb_005527_040 Hb_001904_090 Hb_001904_090 Hb_001519_030--Hb_001904_090 Hb_000173_220 Hb_000173_220 Hb_017948_010--Hb_000173_220 Hb_003994_040 Hb_003994_040 Hb_017948_010--Hb_003994_040 Hb_153112_030 Hb_153112_030 Hb_017948_010--Hb_153112_030 Hb_001279_360 Hb_001279_360 Hb_017948_010--Hb_001279_360 Hb_001083_020 Hb_001083_020 Hb_017948_010--Hb_001083_020 Hb_003053_030 Hb_003053_030 Hb_017948_010--Hb_003053_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.2048 11.2194 11.8257 41.7119 24.638 31.6442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
74.0555 107.599 85.3007 39.6646 32.8852

CAGE analysis