Hb_000818_010

Information

Type -
Description -
Location Contig818: 8211-16319
Sequence    

Annotation

kegg
ID tcc:TCM_007580
description Calmodulin-domain protein kinase 5 isoform 1
nr
ID XP_007043083.1
description Calmodulin-domain protein kinase 5 isoform 1 [Theobroma cacao]
swissprot
ID A5A7I7
description Calcium-dependent protein kinase 4 OS=Solanum tuberosum GN=CPK4 PE=2 SV=1
trembl
ID A0A061E1R7
description Calmodulin-domain protein kinase 5 isoform 1 OS=Theobroma cacao GN=TCM_007580 PE=4 SV=1
Gene Ontology
ID GO:0004683
description calcium-dependent protein kinase 26

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59499: 7850-16261 , PASA_asmbl_59500: 7460-16261 , PASA_asmbl_59501: 14273-14769 , PASA_asmbl_59502: 15561-15851
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000818_010 0.0 - - Calmodulin-domain protein kinase 5 isoform 1 [Theobroma cacao]
2 Hb_024071_010 0.0797345122 - - ADP-ribosylation factor, putative [Ricinus communis]
3 Hb_000661_290 0.0829256341 - - PREDICTED: NAD(H) kinase 1-like isoform X1 [Populus euphratica]
4 Hb_000856_190 0.0853349208 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
5 Hb_000983_090 0.0915827252 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
6 Hb_000398_010 0.0918252246 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005016_160 0.0933685687 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
8 Hb_001247_130 0.0943507786 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
9 Hb_000010_400 0.0949152618 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
10 Hb_029799_010 0.0999643918 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
11 Hb_002411_030 0.1039794212 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
12 Hb_005000_190 0.1046828724 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 64 [Jatropha curcas]
13 Hb_002843_120 0.1052482366 - - PREDICTED: uncharacterized protein LOC105645113 isoform X1 [Jatropha curcas]
14 Hb_032202_140 0.1066270677 - - PREDICTED: flap endonuclease GEN-like 1 [Jatropha curcas]
15 Hb_004204_170 0.1076934434 - - synaptosomal associated protein, putative [Ricinus communis]
16 Hb_000803_070 0.1076991183 - - PREDICTED: protein TRAUCO [Jatropha curcas]
17 Hb_000334_220 0.1080730944 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
18 Hb_077562_050 0.1104060507 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
19 Hb_005541_010 0.1109742613 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
20 Hb_004208_030 0.1110555393 transcription factor TF Family: MYB-related PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000818_010 Hb_000818_010 Hb_024071_010 Hb_024071_010 Hb_000818_010--Hb_024071_010 Hb_000661_290 Hb_000661_290 Hb_000818_010--Hb_000661_290 Hb_000856_190 Hb_000856_190 Hb_000818_010--Hb_000856_190 Hb_000983_090 Hb_000983_090 Hb_000818_010--Hb_000983_090 Hb_000398_010 Hb_000398_010 Hb_000818_010--Hb_000398_010 Hb_005016_160 Hb_005016_160 Hb_000818_010--Hb_005016_160 Hb_010795_010 Hb_010795_010 Hb_024071_010--Hb_010795_010 Hb_004678_040 Hb_004678_040 Hb_024071_010--Hb_004678_040 Hb_000453_050 Hb_000453_050 Hb_024071_010--Hb_000453_050 Hb_000010_400 Hb_000010_400 Hb_024071_010--Hb_000010_400 Hb_006817_010 Hb_006817_010 Hb_024071_010--Hb_006817_010 Hb_000521_320 Hb_000521_320 Hb_000661_290--Hb_000521_320 Hb_006816_350 Hb_006816_350 Hb_000661_290--Hb_006816_350 Hb_000868_110 Hb_000868_110 Hb_000661_290--Hb_000868_110 Hb_002671_140 Hb_002671_140 Hb_000661_290--Hb_002671_140 Hb_004586_140 Hb_004586_140 Hb_000661_290--Hb_004586_140 Hb_013399_100 Hb_013399_100 Hb_000661_290--Hb_013399_100 Hb_004204_170 Hb_004204_170 Hb_000856_190--Hb_004204_170 Hb_000856_190--Hb_000983_090 Hb_000334_220 Hb_000334_220 Hb_000856_190--Hb_000334_220 Hb_000085_100 Hb_000085_100 Hb_000856_190--Hb_000085_100 Hb_012762_030 Hb_012762_030 Hb_000856_190--Hb_012762_030 Hb_002411_030 Hb_002411_030 Hb_000983_090--Hb_002411_030 Hb_000983_090--Hb_012762_030 Hb_000983_090--Hb_004204_170 Hb_012055_060 Hb_012055_060 Hb_000983_090--Hb_012055_060 Hb_000331_670 Hb_000331_670 Hb_000983_090--Hb_000331_670 Hb_000398_010--Hb_005016_160 Hb_000676_010 Hb_000676_010 Hb_000398_010--Hb_000676_010 Hb_005541_010 Hb_005541_010 Hb_000398_010--Hb_005541_010 Hb_008725_260 Hb_008725_260 Hb_000398_010--Hb_008725_260 Hb_000230_120 Hb_000230_120 Hb_000398_010--Hb_000230_120 Hb_005016_160--Hb_005541_010 Hb_005016_160--Hb_000334_220 Hb_005016_160--Hb_012055_060 Hb_003052_140 Hb_003052_140 Hb_005016_160--Hb_003052_140 Hb_012564_030 Hb_012564_030 Hb_005016_160--Hb_012564_030 Hb_000336_250 Hb_000336_250 Hb_005016_160--Hb_000336_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
140.151 128.907 123.106 73.6906 132.699 78.8402
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
81.5936 88.265 166.448 52.1007 62.0135

CAGE analysis