Hb_000818_090

Information

Type -
Description -
Location Contig818: 93207-98715
Sequence    

Annotation

kegg
ID rcu:RCOM_1386120
description glutamate receptor 3 plant, putative
nr
ID XP_002520606.1
description glutamate receptor 3 plant, putative [Ricinus communis]
swissprot
ID Q93YT1
description Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2
trembl
ID B9S3N7
description Glutamate receptor OS=Ricinus communis GN=RCOM_1386120 PE=3 SV=1
Gene Ontology
ID GO:0016021
description glutamate receptor -like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59509: 93085-98891 , PASA_asmbl_59510: 93039-98773 , PASA_asmbl_59512: 95175-95426
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000818_090 0.0 - - glutamate receptor 3 plant, putative [Ricinus communis]
2 Hb_001789_120 0.0513554156 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
3 Hb_013394_120 0.0626443834 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
4 Hb_009393_090 0.0683884762 - - acyltransferase, putative [Ricinus communis]
5 Hb_004880_050 0.0756594763 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005365_010 0.0782637574 - - PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
7 Hb_001100_070 0.0783363307 - - PREDICTED: ferredoxin--nitrite reductase, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_001629_120 0.0835487921 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
9 Hb_132840_170 0.0882099788 transcription factor TF Family: NAC Transcription factor [Theobroma cacao]
10 Hb_010222_060 0.0909541926 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_014700_030 0.0952441122 - - tryptophan synthase beta chain, putative [Ricinus communis]
12 Hb_000260_410 0.0964085565 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
13 Hb_000815_090 0.0968554404 - - PREDICTED: uncharacterized protein LOC105630464 isoform X1 [Jatropha curcas]
14 Hb_017491_010 0.0999400116 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
15 Hb_000941_090 0.1009140705 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
16 Hb_001289_010 0.1011594568 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
17 Hb_007270_020 0.1034016776 - - hypothetical protein JCGZ_09593 [Jatropha curcas]
18 Hb_001417_060 0.1070098472 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
19 Hb_000718_060 0.1078084949 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
20 Hb_011909_050 0.1093925107 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]

Gene co-expression network

sample Hb_000818_090 Hb_000818_090 Hb_001789_120 Hb_001789_120 Hb_000818_090--Hb_001789_120 Hb_013394_120 Hb_013394_120 Hb_000818_090--Hb_013394_120 Hb_009393_090 Hb_009393_090 Hb_000818_090--Hb_009393_090 Hb_004880_050 Hb_004880_050 Hb_000818_090--Hb_004880_050 Hb_005365_010 Hb_005365_010 Hb_000818_090--Hb_005365_010 Hb_001100_070 Hb_001100_070 Hb_000818_090--Hb_001100_070 Hb_001789_120--Hb_013394_120 Hb_001789_120--Hb_004880_050 Hb_014700_030 Hb_014700_030 Hb_001789_120--Hb_014700_030 Hb_010222_060 Hb_010222_060 Hb_001789_120--Hb_010222_060 Hb_132840_170 Hb_132840_170 Hb_001789_120--Hb_132840_170 Hb_013394_120--Hb_010222_060 Hb_013394_120--Hb_132840_170 Hb_009522_020 Hb_009522_020 Hb_013394_120--Hb_009522_020 Hb_013394_120--Hb_014700_030 Hb_000718_060 Hb_000718_060 Hb_009393_090--Hb_000718_060 Hb_009393_090--Hb_001100_070 Hb_008221_200 Hb_008221_200 Hb_009393_090--Hb_008221_200 Hb_011909_050 Hb_011909_050 Hb_009393_090--Hb_011909_050 Hb_007270_020 Hb_007270_020 Hb_009393_090--Hb_007270_020 Hb_004880_050--Hb_014700_030 Hb_032779_010 Hb_032779_010 Hb_004880_050--Hb_032779_010 Hb_004880_050--Hb_013394_120 Hb_004880_050--Hb_010222_060 Hb_001629_120 Hb_001629_120 Hb_005365_010--Hb_001629_120 Hb_000173_270 Hb_000173_270 Hb_005365_010--Hb_000173_270 Hb_005365_010--Hb_007270_020 Hb_001417_060 Hb_001417_060 Hb_005365_010--Hb_001417_060 Hb_044653_050 Hb_044653_050 Hb_005365_010--Hb_044653_050 Hb_001289_010 Hb_001289_010 Hb_001100_070--Hb_001289_010 Hb_001100_070--Hb_000718_060 Hb_000617_330 Hb_000617_330 Hb_001100_070--Hb_000617_330 Hb_001100_070--Hb_007270_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.153176 24.5857 42.8353 44.3545 0.206292 0.0498335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.125286 0.0657276 0 5.01288 53.514

CAGE analysis